UHGV-0178357

Genome information

Genome length 30,904 bps

CDS count 49

Completeness 80.66% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178357
vOTU ID	vOTU-029010
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589620
BioSample	SAMN09781760
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.99
Jumbo phage	No

Genome content
Genome length	30,904 bps
GC content	59.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.71%
Average CDS length	588.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178357_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178357_2	UniRef90	UniRef90_UPI00195B715F	NA	NA
UHGV-0178357_2	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0178357_2	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0178357_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178357_2	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0178357_5	PHROG	phrog_824	NA	unknown function
UHGV-0178357_5	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0178357_5	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0178357_5	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0178357_5	Structural annotation	PF08774	NA	NA
UHGV-0178357_6	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0178357_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178357_6	UniRef90	UniRef90_UPI001C63D655	DEAD/DEAH box helicase	NA
UHGV-0178357_6	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0178357_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0178357_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0178357_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0178357_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0178357_6	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0178357_7	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0178357_7	UniRef90	UniRef90_UPI000C77A760	NA	NA
UHGV-0178357_7	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0178357_7	Pfam	PF06048	NA	DUF927
UHGV-0178357_7	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0178357_7	COG	COG5519	NA	NA
UHGV-0178357_7	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0178357_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0178357_8	PHROG	phrog_11992	NA	unknown function
UHGV-0178357_8	UniRef90	UniRef90_UPI0004AF39DD	CHC2 zinc finger domain-containing protein	NA
UHGV-0178357_8	eggNOG-mapper	1235797.C816_02070	NA	NA
UHGV-0178357_8	PADLOC	drt-cluster192	DRT	DRT
UHGV-0178357_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0178357_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0178357_9	PHROG	phrog_18107	NA	unknown function
UHGV-0178357_9	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0178357_9	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0178357_9	Structural annotation	PF05037	NA	NA
UHGV-0178357_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178357_11	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0178357_11	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0178357_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178357_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0178357_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178357_12	UniRef90	UniRef90_A0A843H617	Siphovirus Gp157 family protein	NA
UHGV-0178357_12	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0178357_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178357_12	Structural annotation	PF05565	NA	NA
UHGV-0178357_14	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0178357_15	PHROG	phrog_24490	NA	unknown function
UHGV-0178357_18	Structural annotation	PF11034	NA	NA
UHGV-0178357_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178357_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0178357_21	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0178357_21	eggNOG-mapper	1423775.BAMN01000006_gene1075	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0178357_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0178357_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178357_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0178357_21	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0178357_21	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0178357_22	UniRef90	UniRef90_A0A2A7BGV0	HTH_8 domain-containing protein	NA
UHGV-0178357_22	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-0178357_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178357_22	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0178357_23	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0178357_23	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0178357_23	UniRef90	UniRef90_A0A2A7BH16	HTH cro/C1-type domain-containing protein	NA
UHGV-0178357_23	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0178357_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178357_23	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0178357_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178357_23	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0178357_24	UniRef90	UniRef90_A0A1Y4IXQ8	UDP-N-acetylglucosamine kinase	NA
UHGV-0178357_24	eggNOG-mapper	665956.HMPREF1032_01618	zeta toxin	NA
UHGV-0178357_24	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0178357_24	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-0178357_24	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-0178357_25	UniRef90	UniRef90_UPI0004E14035	virulence RhuM family protein	NA
UHGV-0178357_25	eggNOG-mapper	1408311.JNJM01000013_gene2253	Virulence protein RhuM family	NA
UHGV-0178357_25	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0178357_25	COG	COG3943	NA	NA
UHGV-0178357_25	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0178357_26	KOfam	K14059	int; integrase	NA
UHGV-0178357_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0178357_26	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-0178357_26	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0178357_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178357_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0178357_26	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0178357_27	eggNOG-mapper	665956.HMPREF1032_00120	NA	NA
UHGV-0178357_27	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0178357_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178357_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0178357_29	UniRef90	UniRef90_A0A7I8D1H8	Putative antirepressor - phage associated	NA
UHGV-0178357_29	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-0178357_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178357_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178357_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0178357_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0178357_30	PHROG	phrog_1129	holin	lysis
UHGV-0178357_30	UniRef90	UniRef90_UPI001F43F0BF	phage holin family protein	NA
UHGV-0178357_30	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0178357_30	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178357_30	Structural annotation	PF06946	NA	NA
UHGV-0178357_31	PHROG	phrog_1863	NA	unknown function
UHGV-0178357_31	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0178357_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0178357_32	PHROG	phrog_291	endolysin	lysis
UHGV-0178357_32	UniRef90	UniRef90_UPI001EE19842	glycoside hydrolase family 25 protein	NA
UHGV-0178357_32	eggNOG-mapper	525309.HMPREF0494_0881	Glycosyl hydrolases family 25	NA
UHGV-0178357_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178357_32	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0178357_32	Structural annotation	PF01183, PF05194, COG3757	NA	NA
UHGV-0178357_33	eggNOG-mapper	290402.Cbei_3386	NA	NA
UHGV-0178357_34	PHROG	phrog_13589	NA	unknown function
UHGV-0178357_34	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0178357_36	Structural annotation	PF12245	NA	NA
UHGV-0178357_37	PHROG	phrog_19280	NA	unknown function
UHGV-0178357_37	Structural annotation	PF10651, TIGR02059	NA	NA
UHGV-0178357_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178357_38	UniRef90	UniRef90_UPI000C79A3A8	phage tail protein	NA
UHGV-0178357_38	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0178357_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178357_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178357_38	COG	COG4926	Phage-related protein	NA
UHGV-0178357_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178357_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178357_39	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0178357_39	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0178357_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178357_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178357_40	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0178357_40	UniRef90	UniRef90_A0A1C5W724	Phage-related minor tail protein	NA
UHGV-0178357_40	eggNOG-mapper	1321782.HMPREF1986_01369	Phage tail tape measure protein, TP901 family	NA
UHGV-0178357_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178357_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178357_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0178357_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0178357_41	PHROG	phrog_3033	NA	unknown function
UHGV-0178357_41	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0178357_42	PHROG	phrog_709	NA	unknown function
UHGV-0178357_42	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0178357_42	Structural annotation	PF11836	NA	NA
UHGV-0178357_43	PHROG	phrog_88	major tail protein	tail
UHGV-0178357_43	UniRef90	UniRef90_UPI00073ECEC3	phage tail protein	NA
UHGV-0178357_43	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0178357_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178357_43	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0178357_44	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0178357_44	Structural annotation	PF20765	NA	NA
UHGV-0178357_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178357_45	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-0178357_45	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0178357_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178357_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178357_46	PHROG	phrog_25	head closure Hc1	connector
UHGV-0178357_46	UniRef90	UniRef90_A0A3A6HI00	Head-tail adaptor protein	NA
UHGV-0178357_46	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-0178357_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178357_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178357_46	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0178357_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178357_47	UniRef90	UniRef90_UPI0018979B98	head-tail connector protein	NA
UHGV-0178357_47	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0178357_47	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178357_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178357_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178357_48	UniRef90	UniRef90_UPI0009AD3F23	phage major capsid protein	NA
UHGV-0178357_48	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0178357_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178357_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178357_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178357_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA