UHGV-0178361

Genome information

Genome length 31,302 bps

CDS count 38

Completeness 79.18% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178361
vOTU ID	vOTU-018368
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578421
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.95
Jumbo phage	No

Genome content
Genome length	31,302 bps
GC content	30.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.46%
Average CDS length	738.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178361_3	UniRef90	UniRef90_UPI000C08429B	NA	NA
UHGV-0178361_6	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0178361_6	PHROG	phrog_3088	amidase	lysis
UHGV-0178361_6	UniRef90	UniRef90_UPI00189821B7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178361_6	eggNOG-mapper	1280689.AUJC01000003_gene983	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0178361_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178361_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178361_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0178361_6	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0178361_7	PHROG	phrog_199	holin	lysis
UHGV-0178361_7	UniRef90	UniRef90_A0A1C6KXX7	Phage-related holin (Lysis protein)	NA
UHGV-0178361_7	eggNOG-mapper	1280689.AUJC01000003_gene982	Bacteriophage holin family	NA
UHGV-0178361_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178361_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178361_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178361_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178361_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0178361_10	PHROG	phrog_19567	tail fiber protein	tail
UHGV-0178361_10	eggNOG-mapper	1280689.AUJC01000003_gene979	NA	NA
UHGV-0178361_11	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0178361_11	eggNOG-mapper	1280689.AUJC01000003_gene978	Phage minor structural protein	NA
UHGV-0178361_11	COG	COG4926	Phage-related protein	NA
UHGV-0178361_11	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0178361_12	PHROG	phrog_1194	NA	unknown function
UHGV-0178361_12	eggNOG-mapper	1280689.AUJC01000003_gene977	NA	NA
UHGV-0178361_12	Pfam	PF20458	NA	DUF6711
UHGV-0178361_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178361_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178361_13	UniRef90	UniRef90_A0A1I2KTM2	Phage-related protein	NA
UHGV-0178361_13	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0178361_13	COG	COG1511	NA	NA
UHGV-0178361_14	PHROG	phrog_10292	NA	unknown function
UHGV-0178361_14	UniRef90	UniRef90_UPI00189BEC6D	TM2 domain-containing protein	NA
UHGV-0178361_14	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0178361_14	Pfam	PF05154	TM2 domain	TM2
UHGV-0178361_14	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0178361_14	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-0178361_15	PHROG	phrog_8355	NA	unknown function
UHGV-0178361_15	UniRef90	UniRef90_UPI000665A2C9	Gp15 family bacteriophage protein	NA
UHGV-0178361_15	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0178361_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178361_15	Structural annotation	PF06854	NA	NA
UHGV-0178361_16	PHROG	phrog_8300	NA	unknown function
UHGV-0178361_16	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0178361_16	Structural annotation	PF06896	NA	NA
UHGV-0178361_17	PHROG	phrog_820	major tail protein	tail
UHGV-0178361_17	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0178361_17	COG	COG5492	NA	NA
UHGV-0178361_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178361_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0178361_18	UniRef90	UniRef90_UPI000C08D995	minor capsid protein	NA
UHGV-0178361_18	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0178361_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0178361_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0178361_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178361_19	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0178361_19	eggNOG-mapper	1280692.AUJL01000027_gene2156	Minor capsid protein	NA
UHGV-0178361_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178361_20	PHROG	phrog_8710	NA	unknown function
UHGV-0178361_20	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0178361_20	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0178361_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0178361_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178361_21	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0178361_22	PHROG	phrog_1378	NA	unknown function
UHGV-0178361_22	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0178361_22	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0178361_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0178361_23	UniRef90	UniRef90_UPI000C07344A	capsid protein	NA
UHGV-0178361_23	eggNOG-mapper	1280692.AUJL01000027_gene2160	NA	NA
UHGV-0178361_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178361_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0178361_24	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0178361_24	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0178361_24	Structural annotation	PF10788	NA	NA
UHGV-0178361_25	eggNOG-mapper	1262449.CP6013_3194	NA	NA
UHGV-0178361_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178361_26	UniRef90	UniRef90_UPI001899C2F6	capsid protein	NA
UHGV-0178361_26	eggNOG-mapper	1280692.AUJL01000027_gene2164	Phage minor capsid protein 2	NA
UHGV-0178361_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178361_26	COG	COG2369	NA	NA
UHGV-0178361_26	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0178361_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178361_27	UniRef90	UniRef90_UPI001898ADC2	capsid protein	NA
UHGV-0178361_27	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0178361_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178361_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178361_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0178361_28	UniRef90	UniRef90_UPI001898DC74	terminase family protein	NA
UHGV-0178361_28	eggNOG-mapper	1280692.AUJL01000027_gene2166	Phage terminase, large subunit, PBSX family	NA
UHGV-0178361_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178361_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178361_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178361_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178361_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0178361_29	UniRef90	UniRef90_UPI000C070D15	terminase small subunit	NA
UHGV-0178361_29	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0178361_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178361_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178361_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0178361_30	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0178361_30	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0178361_31	eggNOG-mapper	1196322.A370_00620	NA	NA
UHGV-0178361_32	PHROG	phrog_7312	NA	unknown function
UHGV-0178361_32	UniRef90	UniRef90_M9LB96	NADH:ubiquinone oxidoreductase	NA
UHGV-0178361_32	eggNOG-mapper	698758.AXY_02040	NA	NA
UHGV-0178361_32	PADLOC	KwaA_00002	NA	Kiwa
UHGV-0178361_32	Structural annotation	NF041622	NA	NA
UHGV-0178361_33	PHROG	phrog_11123	NA	unknown function
UHGV-0178361_33	UniRef90	UniRef90_UPI0013E3CE00	NA	NA
UHGV-0178361_33	eggNOG-mapper	1401067.HMPREF0872_06375	NA	NA
UHGV-0178361_33	PADLOC	KwaB_00010	NA	Kiwa
UHGV-0178361_33	Pfam	PF16162	Kiwa protein KwaB-like	KwaB
UHGV-0178361_33	Structural annotation	PF16162, NF041623	NA	NA
UHGV-0178361_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178361_34	UniRef90	UniRef90_A0A174F044	NA	NA
UHGV-0178361_34	eggNOG-mapper	1280692.AUJL01000025_gene2088	NA	NA
UHGV-0178361_34	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0178361_36	KOfam	K05995	pepE; dipeptidase E [EC:3.4.13.21]	NA
UHGV-0178361_36	UniRef90	UniRef90_A0A414D3F1	Peptidase S51	NA
UHGV-0178361_36	eggNOG-mapper	748224.HMPREF9436_00250	Peptidase family S51	NA
UHGV-0178361_36	Pfam	PF03575	Peptidase family S51	Peptidase_S51
UHGV-0178361_36	COG	COG3340	Peptidase E	NA
UHGV-0178361_36	Structural annotation	PF03575, MF_00510, NF003642, COG3340	NA	NA
UHGV-0178361_37	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178361_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178361_37	UniRef90	UniRef90_UPI000C086034	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0178361_37	eggNOG-mapper	1196322.A370_02048	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178361_37	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0178361_37	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178361_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178361_37	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0178361_38	PHROG	phrog_33582	NA	unknown function
UHGV-0178361_38	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA