UHGV-0178382

Genome information

Genome length 41,966 bps

CDS count 79

Completeness 99.87% (high-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178382
vOTU ID	vOTU-010891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_569358
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.44
Jumbo phage	No

Genome content
Genome length	41,966 bps
GC content	54.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	91.32%
Average CDS length	488.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178382_2	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0178382_2	Structural annotation	PF21722	NA	NA
UHGV-0178382_4	PHROG	phrog_18725	NA	unknown function
UHGV-0178382_4	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0178382_5	PHROG	phrog_13879	NA	unknown function
UHGV-0178382_5	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0178382_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0178382_6	PHROG	phrog_1194	NA	unknown function
UHGV-0178382_6	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0178382_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178382_7	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0178382_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178382_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0178382_7	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0178382_7	COG	COG1511	NA	NA
UHGV-0178382_7	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0178382_8	PHROG	phrog_806	NA	unknown function
UHGV-0178382_8	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0178382_8	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0178382_8	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0178382_8	Pfam	PF11611	NA	DUF4352
UHGV-0178382_8	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0178382_9	PHROG	phrog_706	NA	unknown function
UHGV-0178382_9	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0178382_9	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0178382_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178382_9	Structural annotation	PF06854	NA	NA
UHGV-0178382_10	PHROG	phrog_11299	NA	unknown function
UHGV-0178382_10	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0178382_10	Structural annotation	PF10666	NA	NA
UHGV-0178382_11	PHROG	phrog_3099	NA	unknown function
UHGV-0178382_11	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0178382_11	Structural annotation	TIGR02126	NA	NA
UHGV-0178382_12	PHROG	phrog_3266	tail completion	connector
UHGV-0178382_12	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0178382_12	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0178382_12	Structural annotation	PF12691	NA	NA
UHGV-0178382_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178382_13	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0178382_13	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0178382_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178382_13	Structural annotation	PF11114	NA	NA
UHGV-0178382_14	PHROG	phrog_3366	NA	unknown function
UHGV-0178382_14	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0178382_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0178382_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178382_15	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0178382_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0178382_16	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0178382_16	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0178382_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0178382_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178382_17	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0178382_17	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0178382_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178382_17	Structural annotation	PF06810	NA	NA
UHGV-0178382_18	PHROG	phrog_1233	NA	unknown function
UHGV-0178382_18	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0178382_18	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0178382_19	Structural annotation	PF18152	NA	NA
UHGV-0178382_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178382_20	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0178382_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0178382_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178382_20	COG	COG2369	NA	NA
UHGV-0178382_20	Structural annotation	PF06152	NA	NA
UHGV-0178382_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178382_22	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0178382_22	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0178382_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178382_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178382_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178382_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178382_23	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0178382_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0178382_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178382_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178382_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178382_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178382_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178382_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0178382_24	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0178382_24	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0178382_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0178382_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0178382_26	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0178382_29	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0178382_31	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0178382_31	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0178382_31	UniRef90	UniRef90_A0A3D1PJR7	DNA methyltransferase	NA
UHGV-0178382_31	eggNOG-mapper	400682.PAC_15710341	primary miRNA methylation	NA
UHGV-0178382_31	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0178382_31	Pfam	PF05063	MT-A70	MT-A70
UHGV-0178382_31	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0178382_31	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0178382_32	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0178382_33	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0178382_33	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0178382_33	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0178382_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178382_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178382_35	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178382_35	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0178382_35	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0178382_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178382_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178382_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178382_37	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0178382_37	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0178382_37	Pfam	PF06356	NA	DUF1064
UHGV-0178382_37	Structural annotation	PF06356	NA	NA
UHGV-0178382_39	PHROG	phrog_9804	NA	unknown function
UHGV-0178382_39	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0178382_39	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0178382_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0178382_39	Structural annotation	PF11417	NA	NA
UHGV-0178382_40	PHROG	phrog_15768	NA	unknown function
UHGV-0178382_40	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0178382_40	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0178382_40	Pfam	PF19808	NA	DUF6291
UHGV-0178382_40	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0178382_40	Structural annotation	PF19808	NA	NA
UHGV-0178382_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178382_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178382_42	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0178382_42	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0178382_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178382_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178382_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178382_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178382_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178382_43	PHROG	phrog_7566	NA	unknown function
UHGV-0178382_43	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0178382_43	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0178382_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178382_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0178382_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178382_45	Structural annotation	PF05772	NA	NA
UHGV-0178382_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178382_46	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0178382_46	eggNOG-mapper	1522092.A0A090D840_9CAUD	ERF superfamily	NA
UHGV-0178382_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178382_46	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0178382_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178382_47	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0178382_47	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0178382_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178382_47	Structural annotation	PF05565	NA	NA
UHGV-0178382_49	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0178382_49	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0178382_49	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0178382_50	PHROG	phrog_4433	NA	unknown function
UHGV-0178382_50	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0178382_50	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0178382_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178382_50	Structural annotation	NF007410	NA	NA
UHGV-0178382_52	PHROG	phrog_22529	NA	unknown function
UHGV-0178382_52	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0178382_52	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0178382_52	Pfam	PF06725	3D domain	3D
UHGV-0178382_52	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0178382_52	Structural annotation	COG3584	NA	NA
UHGV-0178382_55	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0178382_56	PHROG	phrog_15946	NA	unknown function
UHGV-0178382_56	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0178382_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178382_57	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0178382_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178382_57	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0178382_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178382_58	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0178382_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178382_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178382_58	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178382_62	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0178382_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178382_62	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0178382_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178382_63	PHROG	phrog_95	integrase	integration and excision
UHGV-0178382_63	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0178382_63	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0178382_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178382_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178382_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178382_63	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0178382_64	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0178382_65	PHROG	phrog_28802	NA	unknown function
UHGV-0178382_65	Structural annotation	PF12510	NA	NA
UHGV-0178382_66	PHROG	phrog_20016	NA	unknown function
UHGV-0178382_66	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0178382_66	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0178382_66	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178382_67	PHROG	phrog_16490	NA	unknown function
UHGV-0178382_67	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0178382_68	PHROG	phrog_22984	NA	unknown function
UHGV-0178382_69	PHROG	phrog_21718	NA	unknown function
UHGV-0178382_69	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0178382_70	PHROG	phrog_3754	NA	unknown function
UHGV-0178382_70	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0178382_72	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178382_72	PHROG	phrog_435	endolysin	lysis
UHGV-0178382_72	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0178382_72	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178382_72	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178382_72	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178382_72	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0178382_73	PHROG	phrog_881	holin	lysis
UHGV-0178382_73	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0178382_73	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0178382_73	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0178382_73	Structural annotation	PF16938	NA	NA
UHGV-0178382_74	PHROG	phrog_4105	NA	unknown function
UHGV-0178382_74	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0178382_74	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0178382_76	PHROG	phrog_2310	NA	unknown function
UHGV-0178382_76	eggNOG-mapper	1151292.QEW_0364	NA	NA