UHGV-0178389

Genome information

Genome length 28,336 bps

CDS count 41

Completeness 69.72% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178389
vOTU ID	vOTU-029013
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582592
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.07
Jumbo phage	No

Genome content
Genome length	28,336 bps
GC content	46.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.59%
Average CDS length	664.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178389_1	PHROG	phrog_32744	NA	unknown function
UHGV-0178389_1	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0178389_1	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0178389_2	PHROG	phrog_1194	NA	unknown function
UHGV-0178389_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178389_3	PHROG	phrog_23464	NA	unknown function
UHGV-0178389_3	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0178389_3	COG	COG5283	Phage-related tail protein	NA
UHGV-0178389_5	PHROG	phrog_18646	NA	unknown function
UHGV-0178389_5	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0178389_6	PHROG	phrog_885	major tail protein	tail
UHGV-0178389_6	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0178389_6	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0178389_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0178389_7	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0178389_7	Structural annotation	PF11367	NA	NA
UHGV-0178389_8	PHROG	phrog_17977	NA	unknown function
UHGV-0178389_8	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0178389_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178389_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178389_10	PHROG	phrog_29	major head protein	head and packaging
UHGV-0178389_10	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0178389_10	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0178389_10	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0178389_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0178389_10	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0178389_11	PHROG	phrog_909	major head protein	head and packaging
UHGV-0178389_11	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0178389_11	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0178389_12	Structural annotation	PF06810	NA	NA
UHGV-0178389_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178389_13	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0178389_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178389_14	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0178389_14	Structural annotation	PF10827	NA	NA
UHGV-0178389_15	PHROG	phrog_15127	head protein	head and packaging
UHGV-0178389_15	UniRef90	UniRef90_A0A6B2D3T3	INTEIN_C_TER domain-containing protein	NA
UHGV-0178389_15	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0178389_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178389_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0178389_15	COG	COG2369	NA	NA
UHGV-0178389_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178389_16	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0178389_16	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178389_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178389_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178389_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178389_17	PHROG	phrog_10250	NA	unknown function
UHGV-0178389_17	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0178389_17	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0178389_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178389_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178389_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178389_17	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178389_18	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178389_18	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0178389_18	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0178389_18	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0178389_18	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0178389_18	Structural annotation	PF19835, PF07460, PF07453, TIGR01453	NA	NA
UHGV-0178389_20	PHROG	phrog_930	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178389_20	UniRef90	UniRef90_A0A843H156	ParB N-terminal domain-containing protein	NA
UHGV-0178389_20	eggNOG-mapper	86106.I862_04345	DNA methylase	NA
UHGV-0178389_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178389_20	COG	COG0863	DNA modification methylase	NA
UHGV-0178389_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178389_21	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0178389_21	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0178389_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0178389_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178389_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0178389_22	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178389_22	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178389_22	UniRef90	UniRef90_A0A3D5P8I9	PAPS_reduct domain-containing protein	NA
UHGV-0178389_22	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0178389_22	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178389_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178389_23	PHROG	phrog_34599	NA	unknown function
UHGV-0178389_23	UniRef90	UniRef90_M6UGW1	Putative CRISPR type AFERR-associated protein Csf3	NA
UHGV-0178389_23	eggNOG-mapper	573413.Spirs_2504	NA	NA
UHGV-0178389_23	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0178389_23	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-0178389_24	PHROG	phrog_22746	NA	unknown function
UHGV-0178389_24	UniRef90	UniRef90_A0A7W0HHB2	CRISPR type IV-associated protein Csf2	NA
UHGV-0178389_24	eggNOG-mapper	107636.JQNK01000009_gene1999	crispr-associated protein	NA
UHGV-0178389_24	PADLOC	cluster1	Csf2_0_IV	CRISPR-CAS
UHGV-0178389_24	Pfam	PF03787	RAMP superfamily	RAMPs
UHGV-0178389_24	COG	COG1857	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0178389_24	Structural annotation	PF01905, TIGR03115, COG1604	NA	NA
UHGV-0178389_25	PADLOC	icity0121	Putative small subunit of type IV - was DinG	CRISPR-CAS
UHGV-0178389_26	UniRef90	UniRef90_A0A0B5WZK0	CRISPR type AFERR-associated protein Csf1	NA
UHGV-0178389_26	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-0178389_26	Structural annotation	TIGR03114	NA	NA
UHGV-0178389_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0178389_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0178389_30	UniRef90	UniRef90_A0A1B1YAA4	MBL fold metallo-hydrolase	NA
UHGV-0178389_30	eggNOG-mapper	1382358.JHVN01000024_gene1693	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0178389_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0178389_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0178389_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0178389_31	PHROG	phrog_862	NA	unknown function
UHGV-0178389_31	eggNOG-mapper	887327.HMPREF0476_0921	NA	NA
UHGV-0178389_31	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0178389_32	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0178389_32	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178389_32	UniRef90	UniRef90_A0A7W8MWI1	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0178389_32	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0178389_32	PADLOC	AAA_15	NA	NA
UHGV-0178389_32	Pfam	PF13476	AAA domain	AAA_23
UHGV-0178389_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178389_32	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0178389_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178389_33	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0178389_33	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0178389_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178389_34	PHROG	phrog_16304	NA	unknown function
UHGV-0178389_34	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0178389_34	Pfam	PF19808	NA	DUF6291
UHGV-0178389_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178389_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178389_35	UniRef90	UniRef90_UPI0006D13272	single-stranded DNA-binding protein	NA
UHGV-0178389_35	eggNOG-mapper	335541.Swol_2539	Single-stranded DNA-binding protein	NA
UHGV-0178389_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178389_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178389_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178389_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178389_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178389_40	Pfam	PF08792	A2L zinc ribbon domain	A2L_zn_ribbon
UHGV-0178389_41	eggNOG-mapper	1232443.BAIA02000066_gene981	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0178389_41	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA