UHGV-0178407

Genome information

Genome length 28,796 bps

CDS count 57

Completeness 71.82% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178407
vOTU ID	vOTU-029015
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582591
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.83
Jumbo phage	No

Genome content
Genome length	28,796 bps
GC content	54.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.39%
Average CDS length	481.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178407_4	PHROG	phrog_21357	endolysin	lysis
UHGV-0178407_4	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0178407_4	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0178407_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0178407_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0178407_4	Structural annotation	TIGR02594	NA	NA
UHGV-0178407_5	PHROG	phrog_881	holin	lysis
UHGV-0178407_5	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0178407_5	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0178407_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0178407_5	Structural annotation	PF16938	NA	NA
UHGV-0178407_7	PHROG	phrog_4105	NA	unknown function
UHGV-0178407_9	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0178407_10	PHROG	phrog_13589	NA	unknown function
UHGV-0178407_10	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0178407_11	PHROG	phrog_31538	NA	unknown function
UHGV-0178407_12	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0178407_14	PHROG	phrog_32744	NA	unknown function
UHGV-0178407_14	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0178407_14	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0178407_15	PHROG	phrog_1194	NA	unknown function
UHGV-0178407_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178407_16	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0178407_16	eggNOG-mapper	545697.HMPREF0216_02861	tail tape measure protein	NA
UHGV-0178407_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0178407_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178407_17	UniRef90	UniRef90_A0A0R1K4I1	HNHc domain-containing protein	NA
UHGV-0178407_17	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0178407_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0178407_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0178407_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0178407_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0178407_18	UniRef90	UniRef90_A0A4D6A5R1	Minor tail protein	NA
UHGV-0178407_18	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0178407_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178407_18	Structural annotation	PF20155	NA	NA
UHGV-0178407_19	PHROG	phrog_7115	NA	unknown function
UHGV-0178407_19	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0178407_19	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0178407_19	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0178407_19	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0178407_21	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0178407_22	PHROG	phrog_885	major tail protein	tail
UHGV-0178407_22	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0178407_22	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0178407_22	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0178407_23	PHROG	phrog_17405	head protein	head and packaging
UHGV-0178407_23	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0178407_23	Structural annotation	PF11367	NA	NA
UHGV-0178407_24	PHROG	phrog_17977	NA	unknown function
UHGV-0178407_24	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0178407_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178407_26	PHROG	phrog_267	major head protein	head and packaging
UHGV-0178407_26	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0178407_26	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0178407_26	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0178407_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178407_27	UniRef90	UniRef90_B6CXE3	Fibronectin autolysin	NA
UHGV-0178407_27	Structural annotation	PF06810	NA	NA
UHGV-0178407_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178407_29	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0178407_29	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0178407_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178407_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178407_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0178407_30	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0178407_30	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0178407_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178407_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0178407_30	COG	COG2369	NA	NA
UHGV-0178407_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0178407_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178407_31	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0178407_31	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0178407_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178407_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178407_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178407_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178407_32	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0178407_32	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0178407_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178407_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178407_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178407_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178407_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178407_33	UniRef90	UniRef90_K4Z6K7	Terminase small subunit	NA
UHGV-0178407_33	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-0178407_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178407_34	PHROG	phrog_33130	NA	unknown function
UHGV-0178407_34	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0178407_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178407_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178407_35	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0178407_35	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0178407_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178407_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178407_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178407_36	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0178407_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178407_39	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0178407_39	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0178407_39	Pfam	PF06356	NA	DUF1064
UHGV-0178407_39	Structural annotation	PF06356	NA	NA
UHGV-0178407_44	PHROG	phrog_3136	NA	unknown function
UHGV-0178407_44	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0178407_44	eggNOG-mapper	198628.Dda3937_01763	ASCH	NA
UHGV-0178407_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0178407_44	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0178407_45	PHROG	phrog_38832	NA	unknown function
UHGV-0178407_45	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0178407_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178407_48	PHROG	phrog_17284	NA	unknown function
UHGV-0178407_48	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178407_48	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0178407_48	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0178407_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178407_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178407_48	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0178407_49	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178407_49	UniRef90	UniRef90_A0A139QI12	HNH homing endonuclease	NA
UHGV-0178407_49	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0178407_49	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0178407_49	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0178407_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0178407_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178407_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178407_50	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0178407_50	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0178407_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0178407_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178407_50	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0178407_51	PHROG	phrog_15768	NA	unknown function
UHGV-0178407_51	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0178407_51	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0178407_51	Pfam	PF19808	NA	DUF6291
UHGV-0178407_51	Structural annotation	PF19808	NA	NA
UHGV-0178407_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178407_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178407_53	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0178407_53	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0178407_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178407_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178407_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178407_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178407_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178407_55	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178407_55	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178407_55	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0178407_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178407_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178407_56	PHROG	phrog_1389	NA	unknown function
UHGV-0178407_56	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0178407_56	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0178407_57	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178407_57	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0178407_57	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA