UHGV-0178413

Genome information

Genome length 67,667 bps

CDS count 100

Completeness 100.00% (complete)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178413
vOTU ID	vOTU-000428
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581936
BioSample	SAMN09781719
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.17
Jumbo phage	No

Genome content
Genome length	67,667 bps
GC content	46.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	91.12%
Average CDS length	621.09 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178413_1	PHROG	phrog_19695	NA	unknown function
UHGV-0178413_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178413_2	UniRef90	UniRef90_H0F6V0	Putative phage tail fiber protein	NA
UHGV-0178413_2	eggNOG-mapper	443152.MDG893_20534	NA	NA
UHGV-0178413_3	KOfam	K01760	metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]	NA
UHGV-0178413_3	UniRef90	UniRef90_A0A7Y8HHI4	PLP-dependent transferase	NA
UHGV-0178413_3	eggNOG-mapper	996306.SSUR61_2179	Cys/Met metabolism PLP-dependent enzyme	NA
UHGV-0178413_3	Pfam	PF01053	Cys/Met metabolism PLP-dependent enzyme	Cys_Met_Meta_PP
UHGV-0178413_3	COG	COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	NA
UHGV-0178413_3	Structural annotation	PF01053, MF_02056, NF005577, COG0626	NA	NA
UHGV-0178413_4	PHROG	phrog_26466	NA	unknown function
UHGV-0178413_4	eggNOG-mapper	1232428.CAVO010000021_gene792	Putative phage tail protein	NA
UHGV-0178413_4	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0178413_4	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0178413_5	eggNOG-mapper	1401067.HMPREF0872_03805	NA	NA
UHGV-0178413_5	Structural annotation	PF20387	NA	NA
UHGV-0178413_6	Structural annotation	PF20387	NA	NA
UHGV-0178413_8	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0178413_8	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0178413_8	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0178413_8	Pfam	PF17236	NA	DUF5309
UHGV-0178413_8	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0178413_9	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0178413_11	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0178413_11	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0178413_11	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-0178413_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0178413_11	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0178413_12	Structural annotation	PF21621, MF_01255, NF009806, COG4766	NA	NA
UHGV-0178413_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0178413_13	UniRef90	UniRef90_UPI001D071048	NA	NA
UHGV-0178413_13	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0178413_13	Pfam	PF14359	NA	DUF4406
UHGV-0178413_13	Structural annotation	PF14359	NA	NA
UHGV-0178413_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178413_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0178413_14	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0178413_14	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0178413_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178413_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178413_14	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0178413_15	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0178413_15	UniRef90	UniRef90_A0A2G6UEM0	DNA-packaging protein gp3	NA
UHGV-0178413_15	eggNOG-mapper	485915.Dret_1613	DNA-packaging protein gp3	NA
UHGV-0178413_15	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0178413_18	PHROG	phrog_16683	NA	unknown function
UHGV-0178413_18	UniRef90	UniRef90_UPI000C7E58C8	amidoligase family protein	NA
UHGV-0178413_18	eggNOG-mapper	1007096.BAGW01000006_gene1758	Putative amidoligase enzyme	NA
UHGV-0178413_18	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0178413_18	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0178413_19	UniRef90	UniRef90_A0A523RS96	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0178413_19	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0178413_19	Structural annotation	MF_01931, TIGR01134, COG0034	NA	NA
UHGV-0178413_20	Structural annotation	NF009506	NA	NA
UHGV-0178413_21	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0178413_23	eggNOG-mapper	661087.HMPREF1008_00254	nuclease activity	NA
UHGV-0178413_23	AcrCatalog	cluster_21391	NA	NA
UHGV-0178413_23	COG	COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	NA
UHGV-0178413_26	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0178413_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178413_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178413_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178413_28	UniRef90	UniRef90_A0A1Q6R563	Single-stranded DNA-binding protein	NA
UHGV-0178413_28	eggNOG-mapper	546271.Selsp_1347	Single-strand binding protein family	NA
UHGV-0178413_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178413_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178413_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178413_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178413_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178413_29	UniRef90	UniRef90_A0A1Q6R577	NA	NA
UHGV-0178413_29	Pfam	PF18892	NA	DUF5651
UHGV-0178413_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178413_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178413_35	UniRef90	UniRef90_UPI0009884093	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178413_35	eggNOG-mapper	1121091.AUMP01000032_gene3086	holliday junction resolvase	NA
UHGV-0178413_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0178413_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178413_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0178413_40	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0178413_42	PHROG	phrog_2776	NA	unknown function
UHGV-0178413_42	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0178413_42	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0178413_43	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0178413_50	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178413_50	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0178413_50	Structural annotation	PF02888	NA	NA
UHGV-0178413_51	PHROG	phrog_10714	NA	unknown function
UHGV-0178413_51	Structural annotation	PF21173	NA	NA
UHGV-0178413_61	PHROG	phrog_9804	NA	unknown function
UHGV-0178413_61	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0178413_61	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0178413_61	Structural annotation	PF11417	NA	NA
UHGV-0178413_62	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0178413_62	UniRef90	UniRef90_UPI0013D3F9A2	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0178413_62	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0178413_62	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0178413_62	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0178413_62	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0178413_64	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0178413_64	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178413_64	UniRef90	UniRef90_A0A7Y2L7X7	Recombinase RecT	NA
UHGV-0178413_64	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0178413_64	Pfam	PF03837	RecT family	RecT
UHGV-0178413_64	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0178413_64	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0178413_64	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0178413_65	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178413_65	UniRef90	UniRef90_A0A1Q6R5A9	YqaJ domain-containing protein	NA
UHGV-0178413_65	eggNOG-mapper	391009.Tmel_1473	YqaJ-like viral recombinase domain	NA
UHGV-0178413_65	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0178413_65	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0178413_65	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0178413_65	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178413_68	UniRef90	UniRef90_A0A1Q6R526	LysM domain-containing protein	NA
UHGV-0178413_68	Pfam	PF01476	LysM domain	LysM
UHGV-0178413_68	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0178413_69	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0178413_71	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178413_71	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0178413_71	UniRef90	UniRef90_A0A1Q6R5B0	Bro-N domain-containing protein	NA
UHGV-0178413_71	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0178413_71	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178413_71	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178413_71	COG	COG3617	Prophage antirepressor	NA
UHGV-0178413_71	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0178413_74	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178413_74	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0178413_74	UniRef90	UniRef90_UPI001959EDB6	helix-turn-helix domain-containing protein	NA
UHGV-0178413_74	eggNOG-mapper	416870.llmg_2526	Transcriptional regulator	NA
UHGV-0178413_74	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178413_74	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0178413_74	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0178413_75	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178413_75	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178413_75	UniRef90	UniRef90_A0A1Q6R534	HTH cro/C1-type domain-containing protein	NA
UHGV-0178413_75	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0178413_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178413_75	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178413_75	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178413_76	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178413_76	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178413_76	UniRef90	UniRef90_A0A1Q6R550	HTH cro/C1-type domain-containing protein	NA
UHGV-0178413_76	eggNOG-mapper	742735.HMPREF9467_03156	Helix-turn-helix domain	NA
UHGV-0178413_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178413_76	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178413_76	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0178413_78	UniRef90	UniRef90_A0A239THT2	Ada_Zn_binding domain-containing protein	NA
UHGV-0178413_78	eggNOG-mapper	1122216.AUHW01000007_gene1473	nuclease	NA
UHGV-0178413_78	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0178413_78	Structural annotation	PF02805	NA	NA
UHGV-0178413_80	KOfam	K14059	int; integrase	NA
UHGV-0178413_80	PHROG	phrog_1	integrase	integration and excision
UHGV-0178413_80	UniRef90	UniRef90_A0A1Q6R573	Tyr recombinase domain-containing protein	NA
UHGV-0178413_80	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0178413_80	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0178413_80	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178413_80	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178413_80	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0178413_81	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0178413_81	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0178413_82	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178413_83	PHROG	phrog_16490	NA	unknown function
UHGV-0178413_83	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0178413_84	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0178413_85	PHROG	phrog_21718	NA	unknown function
UHGV-0178413_86	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0178413_86	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0178413_86	Structural annotation	PF08281, MF_00674, NF009180, COG1595	NA	NA
UHGV-0178413_89	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0178413_89	PHROG	phrog_822	amidase	lysis
UHGV-0178413_89	UniRef90	UniRef90_A0A1Q6R2Z9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178413_89	eggNOG-mapper	936573.HMPREF1147_1353	Ami_2	NA
UHGV-0178413_89	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178413_89	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0178413_89	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0178413_92	PHROG	phrog_10691	NA	unknown function
UHGV-0178413_92	UniRef90	UniRef90_A0A1Q6R346	Helicase ATP-binding domain-containing protein	NA
UHGV-0178413_92	eggNOG-mapper	1009370.ALO_12301	Type III restriction enzyme, res subunit	NA
UHGV-0178413_92	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0178413_92	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0178413_92	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0178413_92	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178413_94	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0178413_94	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0178413_94	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0178413_94	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0178413_94	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0178413_95	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0178413_96	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0178413_96	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0178413_97	PHROG	phrog_918	NA	unknown function
UHGV-0178413_97	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0178413_97	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0178413_97	Pfam	PF19791	NA	DUF6275
UHGV-0178413_97	Structural annotation	PF19791	NA	NA
UHGV-0178413_98	PHROG	phrog_2837	tail protein	tail
UHGV-0178413_98	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0178413_98	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0178413_98	Pfam	PF14301	NA	DUF4376
UHGV-0178413_98	Structural annotation	PF14301	NA	NA
UHGV-0178413_99	Structural annotation	PF08948	NA	NA
UHGV-0178413_100	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0178413_100	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0178413_100	eggNOG-mapper	1232452.BAIB02000007_gene1608	Collagen triple helix repeat	NA
UHGV-0178413_100	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178413_100	COG	COG5164	Transcription elongation factor SPT5	NA