UHGV-0178421

Genome information

Genome length 42,773 bps

CDS count 73

Completeness 94.79% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178421
vOTU ID	vOTU-070089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581944
BioSample	SAMN09781719
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.1
Jumbo phage	No

Genome content
Genome length	42,773 bps
GC content	40.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.44%
Average CDS length	534.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178421_1	PHROG	phrog_6616	tail protein	tail
UHGV-0178421_1	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0178421_1	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0178421_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0178421_2	PHROG	phrog_1194	NA	unknown function
UHGV-0178421_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178421_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178421_3	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0178421_3	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0178421_3	COG	COG1511	NA	NA
UHGV-0178421_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0178421_4	PHROG	phrog_706	NA	unknown function
UHGV-0178421_4	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0178421_4	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0178421_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178421_4	Structural annotation	PF06854	NA	NA
UHGV-0178421_5	PHROG	phrog_11299	NA	unknown function
UHGV-0178421_5	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0178421_5	Structural annotation	PF10666	NA	NA
UHGV-0178421_6	PHROG	phrog_3099	NA	unknown function
UHGV-0178421_6	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0178421_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178421_7	PHROG	phrog_3266	tail completion	connector
UHGV-0178421_7	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0178421_7	Structural annotation	PF12691	NA	NA
UHGV-0178421_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178421_8	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0178421_8	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0178421_8	Structural annotation	PF11114	NA	NA
UHGV-0178421_9	PHROG	phrog_3366	NA	unknown function
UHGV-0178421_9	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0178421_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0178421_10	PHROG	phrog_8680	NA	unknown function
UHGV-0178421_10	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0178421_10	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0178421_10	Pfam	PF14386	NA	DUF4417
UHGV-0178421_10	Structural annotation	PF14386	NA	NA
UHGV-0178421_12	PHROG	phrog_1129	holin	lysis
UHGV-0178421_12	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0178421_12	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0178421_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178421_12	Structural annotation	PF06946	NA	NA
UHGV-0178421_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178421_13	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0178421_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0178421_15	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0178421_15	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0178421_15	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0178421_15	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178421_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178421_16	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0178421_16	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0178421_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178421_17	PHROG	phrog_28802	NA	unknown function
UHGV-0178421_17	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0178421_18	PHROG	phrog_20016	NA	unknown function
UHGV-0178421_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0178421_18	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0178421_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178421_19	PHROG	phrog_16490	NA	unknown function
UHGV-0178421_19	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0178421_20	PHROG	phrog_22984	NA	unknown function
UHGV-0178421_21	PHROG	phrog_21718	NA	unknown function
UHGV-0178421_21	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0178421_22	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0178421_22	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0178421_23	PHROG	phrog_3754	NA	unknown function
UHGV-0178421_23	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0178421_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178421_24	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0178421_24	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0178421_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178421_24	COG	COG2369	NA	NA
UHGV-0178421_24	Structural annotation	PF06152	NA	NA
UHGV-0178421_25	Structural annotation	PF16255, NF007819, COG2845	NA	NA
UHGV-0178421_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178421_27	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0178421_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0178421_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178421_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178421_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178421_29	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0178421_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0178421_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178421_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178421_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178421_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178421_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178421_30	PHROG	phrog_10714	NA	unknown function
UHGV-0178421_30	UniRef90	UniRef90_UPI001D08C917	helix-turn-helix domain-containing protein	NA
UHGV-0178421_30	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0178421_31	Structural annotation	PF17630	NA	NA
UHGV-0178421_35	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0178421_39	PHROG	phrog_20593	NA	unknown function
UHGV-0178421_40	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0178421_40	AcrCatalog	cluster_11670	NA	NA
UHGV-0178421_43	PHROG	phrog_15198	NA	unknown function
UHGV-0178421_43	UniRef90	UniRef90_UPI000E4C0B2A	NA	NA
UHGV-0178421_43	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0178421_43	Pfam	PF04448	NA	DUF551
UHGV-0178421_44	PHROG	phrog_419	NA	unknown function
UHGV-0178421_44	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0178421_44	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0178421_45	PHROG	phrog_4601	NA	unknown function
UHGV-0178421_45	Structural annotation	PF17888	NA	NA
UHGV-0178421_47	Structural annotation	NF041070	NA	NA
UHGV-0178421_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178421_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178421_48	UniRef90	UniRef90_A0A3E5ENN5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178421_48	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0178421_48	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0178421_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178421_48	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178421_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178421_48	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0178421_51	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0178421_51	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0178421_51	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0178421_51	eggNOG-mapper	1504823.CCMM01000005_gene215	Caulimovirus viroplasmin	NA
UHGV-0178421_51	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0178421_51	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0178421_51	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0178421_51	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-0178421_52	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0178421_52	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0178421_52	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0178421_52	Pfam	PF06048	NA	DUF927
UHGV-0178421_52	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0178421_52	COG	COG5519	NA	NA
UHGV-0178421_52	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0178421_53	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0178421_53	PHROG	phrog_11992	NA	unknown function
UHGV-0178421_53	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0178421_53	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0178421_53	PADLOC	drt-UG29	DRT	DRT
UHGV-0178421_53	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0178421_53	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0178421_53	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0178421_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0178421_54	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0178421_54	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0178421_54	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0178421_54	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0178421_55	PHROG	phrog_18107	NA	unknown function
UHGV-0178421_55	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0178421_55	Structural annotation	PF05037	NA	NA
UHGV-0178421_56	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178421_56	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0178421_56	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0178421_56	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178421_56	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0178421_57	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0178421_58	Structural annotation	NF001645	NA	NA
UHGV-0178421_63	PHROG	phrog_6058	NA	unknown function
UHGV-0178421_63	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0178421_63	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0178421_66	UniRef90	UniRef90_A0A3R6RM60	XRE family transcriptional regulator	NA
UHGV-0178421_66	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0178421_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178421_67	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178421_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178421_67	UniRef90	UniRef90_A0A8J8SBE0	Helix-turn-helix transcriptional regulator	NA
UHGV-0178421_67	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178421_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178421_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178421_70	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0178421_70	PHROG	phrog_8810	NA	unknown function
UHGV-0178421_70	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0178421_70	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0178421_70	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0178421_70	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0178421_70	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0178421_70	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0178421_71	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0178421_71	PHROG	phrog_19856	NA	unknown function
UHGV-0178421_71	UniRef90	UniRef90_A0A416IWX8	Restriction endonuclease	NA
UHGV-0178421_71	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0178421_71	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0178421_71	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0178421_71	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0178421_71	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-0178421_72	KOfam	K14059	int; integrase	NA
UHGV-0178421_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0178421_72	UniRef90	UniRef90_A0A414EG15	Integrase	NA
UHGV-0178421_72	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0178421_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178421_72	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0178421_73	UniRef90	UniRef90_UPI001C39B6DF	SH3 domain-containing protein	NA
UHGV-0178421_73	eggNOG-mapper	411460.RUMTOR_00490	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0178421_73	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0178421_73	COG	COG1388	LysM repeat	NA