UHGV-0178422

Genome information

Genome length 42,483 bps

CDS count 53

Completeness 98.21% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178422
vOTU ID	vOTU-009301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581945
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.64
Jumbo phage	No

Genome content
Genome length	42,483 bps
GC content	58.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.13%
Average CDS length	757.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178422_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0178422_3	UniRef90	UniRef90_UPI0013C3FC23	chromate transporter	NA
UHGV-0178422_3	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0178422_4	UniRef90	UniRef90_UPI00141260EC	helix-turn-helix domain-containing protein	NA
UHGV-0178422_4	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0178422_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178422_5	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0178422_5	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0178422_5	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0178422_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178422_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178422_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178422_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-0178422_6	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0178422_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178422_7	KOfam	K07584	NA	NA
UHGV-0178422_7	PHROG	phrog_4478	peptidase	other
UHGV-0178422_7	UniRef90	UniRef90_A0A7V5VPG0	Ribosomal-processing cysteine protease Prp	NA
UHGV-0178422_7	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0178422_7	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0178422_7	COG	COG2868	NA	NA
UHGV-0178422_7	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0178422_8	PHROG	phrog_13908	NA	unknown function
UHGV-0178422_8	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-0178422_8	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0178422_9	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0178422_9	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0178422_9	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0178422_9	Pfam	PF13252	NA	DUF4043
UHGV-0178422_9	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0178422_9	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178422_10	PHROG	phrog_15239	NA	unknown function
UHGV-0178422_11	PHROG	phrog_12105	NA	unknown function
UHGV-0178422_11	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0178422_12	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0178422_12	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0178422_12	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0178422_13	Structural annotation	NF038340	NA	NA
UHGV-0178422_14	PHROG	phrog_372	tail protein	tail
UHGV-0178422_14	UniRef90	UniRef90_A0A3N0HXV0	Pilus assembly protein	NA
UHGV-0178422_14	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0178422_14	Pfam	PF05895	NA	DUF859
UHGV-0178422_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0178422_14	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0178422_16	PHROG	phrog_30034	NA	unknown function
UHGV-0178422_16	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0178422_16	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0178422_16	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0178422_17	PHROG	phrog_199	holin	lysis
UHGV-0178422_17	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0178422_17	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0178422_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178422_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178422_17	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178422_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178422_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178422_18	PHROG	phrog_1493	endolysin	lysis
UHGV-0178422_18	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0178422_18	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0178422_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178422_18	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178422_18	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0178422_18	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0178422_19	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0178422_20	PHROG	phrog_22978	NA	unknown function
UHGV-0178422_20	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0178422_20	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0178422_24	PHROG	phrog_16490	NA	unknown function
UHGV-0178422_24	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0178422_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178422_26	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0178422_26	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0178422_27	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178422_27	PHROG	phrog_95	integrase	integration and excision
UHGV-0178422_27	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0178422_27	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0178422_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178422_27	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178422_27	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178422_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178422_27	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0178422_28	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0178422_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178422_28	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0178422_28	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0178422_30	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0178422_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178422_31	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0178422_31	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178422_31	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178422_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178422_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178422_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178422_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178422_36	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178422_36	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0178422_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0178422_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178422_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178422_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0178422_37	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0178422_37	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178422_37	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0178422_37	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0178422_37	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0178422_37	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0178422_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178422_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178422_37	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0178422_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178422_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178422_39	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178422_39	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0178422_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0178422_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178422_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0178422_40	PHROG	phrog_15768	NA	unknown function
UHGV-0178422_40	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0178422_40	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0178422_40	Pfam	PF19808	NA	DUF6291
UHGV-0178422_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178422_40	Structural annotation	PF19808	NA	NA
UHGV-0178422_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178422_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178422_41	UniRef90	UniRef90_A0A355UNE2	Single-stranded DNA-binding protein	NA
UHGV-0178422_41	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0178422_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178422_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178422_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178422_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178422_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178422_42	PHROG	phrog_7566	NA	unknown function
UHGV-0178422_42	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0178422_42	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0178422_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178422_43	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0178422_43	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178422_43	Structural annotation	PF05772	NA	NA
UHGV-0178422_44	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0178422_44	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-0178422_45	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0178422_45	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0178422_45	Pfam	PF06378	NA	DUF1071
UHGV-0178422_45	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0178422_48	Structural annotation	PF13384	NA	NA
UHGV-0178422_49	Pfam	PF04448	NA	DUF551
UHGV-0178422_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178422_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0178422_53	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0178422_53	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178422_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178422_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA