UHGV-0178423

Genome information

Genome length 41,996 bps

CDS count 64

Completeness 94.28% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178423
vOTU ID	vOTU-070090
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586179
BioSample	SAMN09781741
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.73
Jumbo phage	No

Genome content
Genome length	41,996 bps
GC content	57.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.18%
Average CDS length	603.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178423_2	Structural annotation	COG4451	NA	NA
UHGV-0178423_6	PHROG	phrog_15863	NA	unknown function
UHGV-0178423_6	UniRef90	UniRef90_A0A417HVZ9	J domain-containing protein	NA
UHGV-0178423_6	eggNOG-mapper	1378168.N510_02965	DnaJ molecular chaperone homology domain	NA
UHGV-0178423_6	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0178423_9	PHROG	phrog_824	NA	unknown function
UHGV-0178423_9	UniRef90	UniRef90_A0A645CPG3	VRR-NUC domain-containing protein	NA
UHGV-0178423_9	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0178423_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0178423_10	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0178423_11	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0178423_11	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0178423_11	UniRef90	UniRef90_A0A1Y3WR29	Thymidylate synthase (FAD)	NA
UHGV-0178423_11	eggNOG-mapper	720554.Clocl_3035	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0178423_11	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0178423_11	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0178423_11	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0178423_11	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0178423_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178423_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178423_12	UniRef90	UniRef90_A0A1Q6PWP7	Single-stranded DNA-binding protein	NA
UHGV-0178423_12	eggNOG-mapper	1235835.C814_03423	Single-stranded DNA-binding protein	NA
UHGV-0178423_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178423_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178423_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178423_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178423_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178423_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178423_13	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0178423_13	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0178423_15	Pfam	PF04448	NA	DUF551
UHGV-0178423_15	Structural annotation	NF041588	NA	NA
UHGV-0178423_17	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0178423_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0178423_17	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0178423_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178423_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0178423_31	UniRef90	UniRef90_A0A0F4W331	Transcriptional regulator, Cro/CI family	NA
UHGV-0178423_31	eggNOG-mapper	1028307.EAE_21200	phage repressor	NA
UHGV-0178423_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178423_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178423_31	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0178423_31	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0178423_33	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0178423_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178423_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178423_33	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178423_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178423_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0178423_34	UniRef90	UniRef90_UPI001F48E5DD	recombinase family protein	NA
UHGV-0178423_34	eggNOG-mapper	645991.Sgly_0308	Resolvase, N terminal domain	NA
UHGV-0178423_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178423_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178423_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178423_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178423_34	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0178423_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178423_38	PHROG	phrog_16490	NA	unknown function
UHGV-0178423_38	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0178423_39	PHROG	phrog_22984	NA	unknown function
UHGV-0178423_40	PHROG	phrog_21718	NA	unknown function
UHGV-0178423_40	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0178423_41	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178423_41	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0178423_41	Pfam	PF12855	ECL1/2/3 zinc binding proteins	Ecl1
UHGV-0178423_42	Structural annotation	PF07878, NF041264, COG4710	NA	NA
UHGV-0178423_45	PHROG	phrog_199	holin	lysis
UHGV-0178423_45	UniRef90	UniRef90_A0A7C6FMM1	Phage holin family protein	NA
UHGV-0178423_45	eggNOG-mapper	1216932.CM240_0689	toxin secretion phage lysis holin	NA
UHGV-0178423_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178423_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178423_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178423_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178423_46	KOfam	K21470	ycbB; L,D-transpeptidase YcbB	NA
UHGV-0178423_46	PHROG	phrog_1493	endolysin	lysis
UHGV-0178423_46	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0178423_46	eggNOG-mapper	1246484.D479_19733	Ami_3	NA
UHGV-0178423_46	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178423_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178423_46	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0178423_48	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0178423_48	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0178423_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178423_49	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0178423_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0178423_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178423_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178423_49	Structural annotation	PF14594, PF06848, TIGR01665, COG4926	NA	NA
UHGV-0178423_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178423_50	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-0178423_50	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0178423_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178423_50	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0178423_51	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0178423_51	UniRef90	UniRef90_UPI001E46AA29	phage tail tape measure protein	NA
UHGV-0178423_51	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0178423_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178423_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178423_51	Structural annotation	PF10145, TIGR01760, TIGR01843, COG5280	NA	NA
UHGV-0178423_53	eggNOG-mapper	1196031.ALEG01000039_gene1823	NA	NA
UHGV-0178423_54	PHROG	phrog_88	major tail protein	tail
UHGV-0178423_54	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-0178423_54	eggNOG-mapper	203119.Cthe_1713	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0178423_54	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0178423_54	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178423_54	COG	COG5492	NA	NA
UHGV-0178423_54	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0178423_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178423_55	UniRef90	UniRef90_A0A6M3K0V5	Putative tail protein	NA
UHGV-0178423_55	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178423_55	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178423_55	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0178423_56	Structural annotation	PF05657	NA	NA
UHGV-0178423_57	PHROG	phrog_25	head closure Hc1	connector
UHGV-0178423_57	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-0178423_57	eggNOG-mapper	994573.T472_0211015	head-tail adaptor	NA
UHGV-0178423_57	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178423_57	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178423_57	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0178423_57	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178423_58	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0178423_58	eggNOG-mapper	525309.HMPREF0494_0884	Phage gp6-like head-tail connector protein	NA
UHGV-0178423_58	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178423_58	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178423_58	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178423_59	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178423_59	UniRef90	UniRef90_F6DMJ1	Phage major capsid protein, HK97 family	NA
UHGV-0178423_59	eggNOG-mapper	397288.C806_00801	Phage capsid family	NA
UHGV-0178423_59	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178423_59	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178423_59	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178423_59	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178423_60	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0178423_60	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0178423_60	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0178423_60	eggNOG-mapper	1214217.ALNF01000017_gene210	Belongs to the peptidase S14 family	NA
UHGV-0178423_60	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0178423_60	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0178423_61	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178423_61	UniRef90	UniRef90_A0A7C6FQM5	Phage portal protein	NA
UHGV-0178423_61	eggNOG-mapper	243164.DET1087	Portal protein	NA
UHGV-0178423_61	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178423_61	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178423_61	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178423_61	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178423_62	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178423_62	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178423_62	UniRef90	UniRef90_A0A269TC76	HNH endonuclease	NA
UHGV-0178423_62	eggNOG-mapper	665950.HMPREF1025_02716	HNH endonuclease	NA
UHGV-0178423_62	AcrCatalog	cluster_19695	NA	NA
UHGV-0178423_62	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178423_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178423_62	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0178423_63	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178423_63	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-0178423_63	eggNOG-mapper	1540257.JQMW01000004_gene422	Terminase	NA
UHGV-0178423_63	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178423_63	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178423_63	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178423_63	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0178423_64	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0178423_64	UniRef90	UniRef90_A0A2V2FLZ3	Phage terminase small subunit P27 family	NA
UHGV-0178423_64	eggNOG-mapper	1209989.TepiRe1_2607	Phage terminase, small subunit	NA
UHGV-0178423_64	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178423_64	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0178423_64	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0178423_64	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA