UHGV-0178439

Genome information

Genome length 33,435 bps

CDS count 57

Completeness 95.71% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178439
vOTU ID	vOTU-010994
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592496
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.89
Jumbo phage	No

Genome content
Genome length	33,435 bps
GC content	52.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.68%
Average CDS length	549.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178439_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178439_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178439_1	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0178439_1	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0178439_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178439_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178439_1	Structural annotation	TIGR02646	NA	NA
UHGV-0178439_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178439_2	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-0178439_2	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0178439_2	Structural annotation	PF02996	NA	NA
UHGV-0178439_3	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0178439_3	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0178439_3	UniRef90	UniRef90_A0A0V8JCX0	Bifunctional protein FolD	NA
UHGV-0178439_3	eggNOG-mapper	743719.PaelaDRAFT_1253	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0178439_3	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0178439_3	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0178439_3	Structural annotation	PF02882, MF_01576, NF010769, COG0190	NA	NA
UHGV-0178439_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0178439_4	UniRef90	UniRef90_A0A3E3I255	NA	NA
UHGV-0178439_4	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0178439_4	Pfam	PF14359	NA	DUF4406
UHGV-0178439_4	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0178439_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178439_12	UniRef90	UniRef90_A0A1E7GWT5	MazG domain-containing protein (Fragment)	NA
UHGV-0178439_12	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0178439_12	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0178439_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178439_15	UniRef90	UniRef90_A0A843JAF3	NA	NA
UHGV-0178439_15	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0178439_15	Pfam	PF06356	NA	DUF1064
UHGV-0178439_15	Structural annotation	PF06356	NA	NA
UHGV-0178439_16	PHROG	phrog_16304	NA	unknown function
UHGV-0178439_16	UniRef90	UniRef90_UPI0011C97B10	NA	NA
UHGV-0178439_16	eggNOG-mapper	411483.FAEPRAA2165_01877	HNH endonuclease	NA
UHGV-0178439_16	Pfam	PF19808	NA	DUF6291
UHGV-0178439_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178439_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178439_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178439_17	UniRef90	UniRef90_A0A2N2A191	Single-stranded DNA-binding protein	NA
UHGV-0178439_17	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178439_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178439_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178439_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178439_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178439_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178439_18	PHROG	phrog_7566	NA	unknown function
UHGV-0178439_18	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0178439_19	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0178439_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178439_23	Structural annotation	PF05339, MF_00535, NF002773, COG1476	NA	NA
UHGV-0178439_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0178439_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0178439_28	UniRef90	UniRef90_A0A1C6CFH8	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0178439_28	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0178439_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178439_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178439_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178439_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178439_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0178439_29	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0178439_29	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0178439_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178439_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178439_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178439_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178439_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178439_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178439_33	KOfam	K14059	int; integrase	NA
UHGV-0178439_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0178439_33	UniRef90	UniRef90_UPI00030B7B7C	tyrosine-type recombinase/integrase	NA
UHGV-0178439_33	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0178439_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178439_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178439_33	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0178439_34	PHROG	phrog_12389	NA	unknown function
UHGV-0178439_34	eggNOG-mapper	693746.OBV_p-00550	NA	NA
UHGV-0178439_35	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0178439_35	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0178439_35	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0178439_36	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0178439_38	UniRef90	UniRef90_UPI001C00BADA	helix-turn-helix domain-containing protein	NA
UHGV-0178439_38	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0178439_38	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0178439_39	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0178439_40	PHROG	phrog_1863	NA	unknown function
UHGV-0178439_40	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0178439_41	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0178439_41	PHROG	phrog_329	minor tail protein	tail
UHGV-0178439_41	UniRef90	UniRef90_A0A316PD96	NlpC/P60 domain-containing protein	NA
UHGV-0178439_41	eggNOG-mapper	1033740.CAEW01000032_gene2157	NlpC/P60 family	NA
UHGV-0178439_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0178439_41	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0178439_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0178439_41	Structural annotation	PF00877, PF18342, NF033742, NF041850, COG0791, COG4991	NA	NA
UHGV-0178439_43	PHROG	phrog_372	tail protein	tail
UHGV-0178439_43	UniRef90	UniRef90_UPI00195FD9F2	NA	NA
UHGV-0178439_43	eggNOG-mapper	428127.EUBDOL_01566	domain, Protein	NA
UHGV-0178439_43	Pfam	PF05895	NA	DUF859
UHGV-0178439_43	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0178439_43	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0178439_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178439_44	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0178439_44	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0178439_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178439_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178439_44	COG	COG4926	Phage-related protein	NA
UHGV-0178439_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178439_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178439_45	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0178439_45	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0178439_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178439_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178439_46	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0178439_46	eggNOG-mapper	720554.Clocl_3669	Phage tail tape measure protein, TP901 family	NA
UHGV-0178439_46	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0178439_46	Structural annotation	PF20155	NA	NA
UHGV-0178439_48	PHROG	phrog_88	major tail protein	tail
UHGV-0178439_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178439_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178439_49	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0178439_49	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0178439_49	Structural annotation	TIGR01725	NA	NA
UHGV-0178439_50	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0178439_50	Structural annotation	PF05657	NA	NA
UHGV-0178439_51	PHROG	phrog_19734	NA	unknown function
UHGV-0178439_51	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0178439_51	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0178439_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178439_52	PHROG	phrog_2550	NA	unknown function
UHGV-0178439_52	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0178439_52	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0178439_52	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178439_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178439_53	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0178439_53	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0178439_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178439_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178439_53	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178439_53	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178439_54	KOfam	K06904	NA	NA
UHGV-0178439_54	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178439_54	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0178439_54	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0178439_54	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178439_54	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178439_54	COG	COG3740	Phage head maturation protease	NA
UHGV-0178439_54	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178439_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178439_55	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0178439_55	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0178439_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178439_55	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178439_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178439_55	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0178439_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178439_56	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0178439_56	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0178439_56	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178439_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178439_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178439_56	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0178439_57	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0178439_57	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0178439_57	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0178439_57	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178439_57	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA