UHGV-0178463

Genome information

Genome length 12,360 bps

CDS count 15

Completeness 91.60% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178463
vOTU ID	vOTU-010997
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581408
BioSample	SAMN09781751
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.1
Jumbo phage	No

Genome content
Genome length	12,360 bps
GC content	37.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	87.69%
Average CDS length	728.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178463_2	UniRef90	UniRef90_A0A2B3TPS5	Head-tail adaptor protein	NA
UHGV-0178463_2	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-0178463_2	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178463_2	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178463_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178463_3	UniRef90	UniRef90_A0A151ATM3	Phage terminase	NA
UHGV-0178463_3	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0178463_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178463_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178463_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178463_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0178463_4	PHROG	phrog_1066	NA	unknown function
UHGV-0178463_4	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0178463_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0178463_5	UniRef90	UniRef90_UPI0017482B2D	head-tail connector protein	NA
UHGV-0178463_5	eggNOG-mapper	1167632.AJTR01000015_gene1285	NA	NA
UHGV-0178463_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178463_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178463_5	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178463_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178463_6	UniRef90	UniRef90_A0A353BS62	Phage major capsid protein	NA
UHGV-0178463_6	eggNOG-mapper	1167632.AJTR01000015_gene1286	Phage capsid family	NA
UHGV-0178463_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178463_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178463_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178463_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178463_7	KOfam	K06904	NA	NA
UHGV-0178463_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178463_7	UniRef90	UniRef90_UPI00031B91DD	HK97 family phage prohead protease	NA
UHGV-0178463_7	eggNOG-mapper	1408438.JADD01000004_gene1087	Caudovirus prohead serine protease	NA
UHGV-0178463_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178463_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178463_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0178463_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178463_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178463_9	UniRef90	UniRef90_R6GPW0	HK97 family phage portal protein	NA
UHGV-0178463_9	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0178463_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178463_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178463_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178463_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178463_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178463_10	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0178463_10	UniRef90	UniRef90_K0NMN5	DnaB-like helicase C-terminal domain protein	NA
UHGV-0178463_10	eggNOG-mapper	1316408.HSISM1_1332	DnaB-like helicase C terminal domain	NA
UHGV-0178463_10	PADLOC	drt-cluster192	DRT	DRT
UHGV-0178463_10	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0178463_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178463_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178463_10	Structural annotation	PF03796, PF13155, MF_04154, NF005369, TIGR01391, COG0305	NA	NA
UHGV-0178463_11	UniRef90	UniRef90_W1I493	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-0178463_11	eggNOG-mapper	1203606.HMPREF1526_03175	NA	NA
UHGV-0178463_12	UniRef90	UniRef90_A0A2N2AQ71	DNA-binding protein	NA
UHGV-0178463_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0178463_12	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0178463_13	eggNOG-mapper	1121912.AUHD01000005_gene1523	NA	NA
UHGV-0178463_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0178463_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178463_14	UniRef90	UniRef90_A0A1V6EFW7	Sporulation initiation inhibitor protein Soj	NA
UHGV-0178463_14	eggNOG-mapper	1307759.JOMJ01000003_gene2091	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0178463_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0178463_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178463_14	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA