UHGV-0178483

Genome information

Genome length 42,274 bps

CDS count 66

Completeness 99.95% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178483
vOTU ID	vOTU-010851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_565354
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.51
Jumbo phage	No

Genome content
Genome length	42,274 bps
GC content	46.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.83%
Average CDS length	579.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178483_2	PHROG	phrog_18107	NA	unknown function
UHGV-0178483_2	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0178483_2	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-0178483_2	Structural annotation	PF05037	NA	NA
UHGV-0178483_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178483_4	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0178483_4	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0178483_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178483_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0178483_5	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178483_5	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0178483_5	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0178483_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178483_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0178483_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178483_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0178483_10	UniRef90	UniRef90_A0A3D0X8U2	HTH cro/C1-type domain-containing protein	NA
UHGV-0178483_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0178483_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178483_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178483_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178483_12	UniRef90	UniRef90_R5HIC1	Helix-turn-helix domain protein	NA
UHGV-0178483_12	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0178483_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178483_15	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0178483_15	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0178483_15	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0178483_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0178483_15	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0178483_16	KOfam	K14059	int; integrase	NA
UHGV-0178483_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0178483_16	UniRef90	UniRef90_R5H870	Site-specific recombinase phage integrase family	NA
UHGV-0178483_16	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0178483_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178483_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178483_16	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0178483_17	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0178483_18	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0178483_19	PHROG	phrog_16490	NA	unknown function
UHGV-0178483_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0178483_20	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0178483_21	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0178483_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178483_22	PHROG	phrog_7698	endolysin	lysis
UHGV-0178483_22	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0178483_22	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178483_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178483_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178483_22	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0178483_25	PHROG	phrog_443	holin	lysis
UHGV-0178483_25	UniRef90	UniRef90_UPI001C3AB75B	Holin	NA
UHGV-0178483_25	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0178483_25	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0178483_25	Structural annotation	PF16945	NA	NA
UHGV-0178483_26	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178483_26	UniRef90	UniRef90_UPI001C38857A	NUMOD4 domain-containing protein	NA
UHGV-0178483_26	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0178483_26	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0178483_26	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0178483_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0178483_26	Structural annotation	PF04936	NA	NA
UHGV-0178483_27	PHROG	phrog_4105	NA	unknown function
UHGV-0178483_27	eggNOG-mapper	742740.HMPREF9474_02252	NA	NA
UHGV-0178483_31	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0178483_31	PHROG	phrog_11157	NA	unknown function
UHGV-0178483_31	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0178483_31	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0178483_31	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0178483_31	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0178483_31	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0178483_31	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0178483_33	PHROG	phrog_13879	NA	unknown function
UHGV-0178483_33	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-0178483_33	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0178483_34	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178483_35	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0178483_35	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0178483_35	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0178483_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178483_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178483_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0178483_35	Structural annotation	PF10145, PF05276, TIGR01760, COG5280	NA	NA
UHGV-0178483_36	PHROG	phrog_706	NA	unknown function
UHGV-0178483_36	UniRef90	UniRef90_UPI0013DE0285	Gp15 family bacteriophage protein	NA
UHGV-0178483_36	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0178483_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178483_36	Structural annotation	PF06854	NA	NA
UHGV-0178483_37	PHROG	phrog_4450	NA	unknown function
UHGV-0178483_37	eggNOG-mapper	545697.HMPREF0216_02856	NA	NA
UHGV-0178483_37	Pfam	PF20378	NA	DUF6673
UHGV-0178483_37	Structural annotation	PF20378	NA	NA
UHGV-0178483_38	PHROG	phrog_820	major tail protein	tail
UHGV-0178483_38	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0178483_38	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0178483_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178483_39	PHROG	phrog_3266	tail completion	connector
UHGV-0178483_39	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0178483_39	Structural annotation	PF12691	NA	NA
UHGV-0178483_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178483_40	UniRef90	UniRef90_UPI00137AF39D	minor capsid protein	NA
UHGV-0178483_40	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0178483_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178483_40	Structural annotation	PF11114	NA	NA
UHGV-0178483_41	PHROG	phrog_3366	NA	unknown function
UHGV-0178483_41	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0178483_41	Pfam	PF20536	NA	DUF6751
UHGV-0178483_41	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0178483_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178483_42	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0178483_43	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0178483_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178483_44	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0178483_44	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0178483_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178483_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178483_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178483_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178483_45	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0178483_45	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0178483_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178483_46	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0178483_46	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0178483_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178483_46	COG	COG2369	NA	NA
UHGV-0178483_46	Structural annotation	PF06152	NA	NA
UHGV-0178483_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178483_47	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0178483_47	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0178483_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178483_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178483_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178483_48	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178483_48	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0178483_48	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0178483_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178483_48	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178483_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178483_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178483_48	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178483_49	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0178483_49	UniRef90	UniRef90_A0A8J6MDX5	Helix-turn-helix domain-containing protein	NA
UHGV-0178483_49	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0178483_49	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0178483_49	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0178483_49	Structural annotation	PF07141	NA	NA
UHGV-0178483_50	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178483_50	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0178483_50	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0178483_51	PHROG	phrog_8684	NA	unknown function
UHGV-0178483_51	UniRef90	UniRef90_UPI00164C829D	YopX family protein	NA
UHGV-0178483_51	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0178483_51	Pfam	PF09643	YopX protein	YopX
UHGV-0178483_51	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0178483_52	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0178483_52	eggNOG-mapper	1227349.C170_11270	NA	NA
UHGV-0178483_52	Structural annotation	PF16475	NA	NA
UHGV-0178483_55	PHROG	phrog_3154	NA	unknown function
UHGV-0178483_58	PHROG	phrog_38832	NA	unknown function
UHGV-0178483_58	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0178483_59	PHROG	phrog_25732	NA	unknown function
UHGV-0178483_59	Structural annotation	NF011227	NA	NA
UHGV-0178483_60	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0178483_60	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-0178483_60	eggNOG-mapper	1121121.KB894312_gene3179	DNA N-6-adenine-methyltransferase	NA
UHGV-0178483_60	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0178483_60	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0178483_60	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0178483_61	PHROG	phrog_474	phosphofructokinase	other
UHGV-0178483_61	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0178483_61	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0178483_61	Pfam	PF19905	NA	DUF6378
UHGV-0178483_61	Structural annotation	PF19905	NA	NA
UHGV-0178483_62	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0178483_62	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0178483_62	UniRef90	UniRef90_A0A517SJ66	dCTP deaminase, dUMP-forming	NA
UHGV-0178483_62	eggNOG-mapper	1121335.Clst_0069	TIGRFAM deoxycytidine triphosphate deaminase	NA
UHGV-0178483_62	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0178483_62	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0178483_62	COG	COG0717	dCTP deaminase	NA
UHGV-0178483_62	HAMAP	MF_00146	dCTP deaminase, dUMP-forming [dcd]	NA
UHGV-0178483_62	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0178483_64	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0178483_64	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0178483_64	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0178483_64	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0178483_64	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0178483_65	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178483_65	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178483_65	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0178483_65	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0178483_65	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0178483_65	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178483_66	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0178483_66	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA