UHGV-0178485

Genome information

Genome length 37,454 bps

CDS count 53

Completeness 99.06% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178485
vOTU ID	vOTU-010843
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_565411
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.73
Jumbo phage	No

Genome content
Genome length	37,454 bps
GC content	60.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.41%
Average CDS length	680.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178485_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178485_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0178485_1	UniRef90	UniRef90_A0A810Q5V8	Integrase	NA
UHGV-0178485_1	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-0178485_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178485_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178485_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178485_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0178485_2	PHROG	phrog_5783	NA	unknown function
UHGV-0178485_2	UniRef90	UniRef90_A0A810Q595	Helicase	NA
UHGV-0178485_2	eggNOG-mapper	638301.HMPREF0444_1540	NYN domain	NA
UHGV-0178485_2	Pfam	PF01936	NYN domain	NYN
UHGV-0178485_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0178485_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0178485_3	PHROG	phrog_1914	NA	unknown function
UHGV-0178485_3	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0178485_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0178485_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0178485_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0178485_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0178485_4	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0178485_4	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0178485_4	UniRef90	UniRef90_R8W0C6	Exonuclease domain-containing protein	NA
UHGV-0178485_4	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0178485_4	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0178485_4	Pfam	PF05154	TM2 domain	TM2
UHGV-0178485_4	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0178485_4	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0178485_4	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0178485_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178485_5	UniRef90	UniRef90_A0A2K9P1I7	Transcriptional regulator	NA
UHGV-0178485_5	eggNOG-mapper	1226325.HMPREF1548_03112	Helix-turn-helix domain	NA
UHGV-0178485_5	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0178485_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178485_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0178485_8	UniRef90	UniRef90_A0A1S8D1C1	HTH cro/C1-type domain-containing protein	NA
UHGV-0178485_8	eggNOG-mapper	1123288.SOV_3c08290	sequence-specific DNA binding	NA
UHGV-0178485_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178485_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178485_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0178485_9	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0178485_9	UniRef90	UniRef90_A0A1Y3RCD0	DNA-binding protein	NA
UHGV-0178485_9	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178485_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0178485_9	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0178485_9	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0178485_12	Structural annotation	PF21327	NA	NA
UHGV-0178485_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178485_13	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0178485_13	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0178485_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178485_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178485_13	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0178485_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178485_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178485_14	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0178485_14	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0178485_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178485_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178485_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178485_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178485_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0178485_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178485_15	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0178485_15	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0178485_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0178485_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178485_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0178485_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0178485_16	PHROG	phrog_27290	NA	unknown function
UHGV-0178485_16	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0178485_16	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0178485_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178485_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178485_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0178485_22	PHROG	phrog_7704	NA	unknown function
UHGV-0178485_22	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0178485_22	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0178485_22	Pfam	PF04448	NA	DUF551
UHGV-0178485_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178485_22	Structural annotation	NF041588	NA	NA
UHGV-0178485_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0178485_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0178485_24	UniRef90	UniRef90_A0A1C6E635	Methyltransferase	NA
UHGV-0178485_24	eggNOG-mapper	1329516.JPST01000005_gene1303	DNA methylase	NA
UHGV-0178485_24	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0178485_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178485_24	COG	COG0863	DNA modification methylase	NA
UHGV-0178485_24	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0178485_25	PHROG	phrog_38832	NA	unknown function
UHGV-0178485_25	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0178485_27	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0178485_27	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0178485_27	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0178485_28	Pfam	PF04448	NA	DUF551
UHGV-0178485_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178485_30	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0178485_30	Structural annotation	PF01446	NA	NA
UHGV-0178485_31	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0178485_31	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0178485_31	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0178485_31	Structural annotation	PF14205	NA	NA
UHGV-0178485_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178485_32	UniRef90	UniRef90_UPI00195F0136	HNH endonuclease	NA
UHGV-0178485_32	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0178485_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178485_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178485_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0178485_33	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0178485_33	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0178485_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178485_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0178485_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0178485_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0178485_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178485_34	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0178485_34	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0178485_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178485_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178485_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178485_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0178485_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178485_36	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0178485_36	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0178485_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178485_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178485_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178485_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178485_37	PHROG	phrog_16951	NA	unknown function
UHGV-0178485_37	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0178485_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178485_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178485_38	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0178485_38	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0178485_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178485_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178485_38	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178485_39	UniRef90	UniRef90_UPI0002DFEA9C	head-tail connector protein	NA
UHGV-0178485_39	eggNOG-mapper	1007096.BAGW01000012_gene2380	NA	NA
UHGV-0178485_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178485_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178485_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0178485_40	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0178485_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178485_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178485_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0178485_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178485_41	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0178485_41	eggNOG-mapper	1123075.AUDP01000020_gene1517	NA	NA
UHGV-0178485_41	Structural annotation	PF05657	NA	NA
UHGV-0178485_43	PHROG	phrog_88	major tail protein	tail
UHGV-0178485_43	UniRef90	UniRef90_A0A1M5PW05	Phage major tail protein, phi13 family	NA
UHGV-0178485_43	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0178485_43	COG	COG5492	NA	NA
UHGV-0178485_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0178485_44	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0178485_45	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0178485_45	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0178485_45	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0178485_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178485_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178485_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0178485_46	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0178485_46	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0178485_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178485_46	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0178485_47	PHROG	phrog_3558	tail protein	tail
UHGV-0178485_47	UniRef90	UniRef90_A0A8J6U198	Phage tail protein	NA
UHGV-0178485_47	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0178485_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178485_47	COG	COG4926	Phage-related protein	NA
UHGV-0178485_47	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0178485_48	PHROG	phrog_372	tail protein	tail
UHGV-0178485_48	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0178485_48	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0178485_48	Pfam	PF05895	NA	DUF859
UHGV-0178485_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0178485_48	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0178485_49	PHROG	phrog_819	tail protein	tail
UHGV-0178485_50	PHROG	phrog_30034	NA	unknown function
UHGV-0178485_50	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0178485_50	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0178485_50	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0178485_51	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0178485_51	PHROG	phrog_2234	tail spike protein	tail
UHGV-0178485_51	UniRef90	UniRef90_UPI00191E7A5D	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0178485_51	eggNOG-mapper	710243.XP_007596484.1	Glucan 1,3-beta-glucosidase	NA
UHGV-0178485_51	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0178485_52	PHROG	phrog_199	holin	lysis
UHGV-0178485_52	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0178485_52	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0178485_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178485_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178485_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178485_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178485_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178485_53	PHROG	phrog_435	endolysin	lysis
UHGV-0178485_53	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178485_53	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0178485_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178485_53	Pfam	PF05036	SPOR domain	SPOR
UHGV-0178485_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178485_53	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA