UHGV-0178579

Genome information

Genome length 21,185 bps

CDS count 28

Completeness 96.32% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178579
vOTU ID	vOTU-060901
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_575359
BioSample	NA
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.25
Jumbo phage	No

Genome content
Genome length	21,185 bps
GC content	38.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	88.64%
Average CDS length	675.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178579_3	PHROG	phrog_17101	NA	unknown function
UHGV-0178579_4	Structural annotation	PF17548	NA	NA
UHGV-0178579_8	Structural annotation	PF17548	NA	NA
UHGV-0178579_9	Structural annotation	PF17427	NA	NA
UHGV-0178579_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0178579_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0178579_11	UniRef90	UniRef90_A0A843GX60	DNA-directed DNA polymerase	NA
UHGV-0178579_11	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0178579_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0178579_11	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0178579_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0178579_18	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0178579_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0178579_22	PHROG	phrog_2150	terminase	head and packaging
UHGV-0178579_22	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-0178579_22	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0178579_22	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0178579_22	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178579_23	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0178579_25	PHROG	phrog_2038	upper collar connector	connector
UHGV-0178579_25	UniRef90	UniRef90_I3PV47	Connector protein	NA
UHGV-0178579_25	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0178579_25	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0178579_25	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0178579_26	PHROG	phrog_2248	tail protein	tail
UHGV-0178579_26	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0178579_27	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0178579_27	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0178579_27	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0178579_27	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA