UHGV-0178608

Genome information

Genome length 33,307 bps

CDS count 45

Completeness 98.76% (high-quality)

geNomad score 0.9486

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178608
vOTU ID	vOTU-071854
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577046
BioSample	SAMN07501162
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9486
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.93
Jumbo phage	No

Genome content
Genome length	33,307 bps
GC content	26.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	87.00%
Average CDS length	644.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178608_1	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0178608_1	UniRef90	UniRef90_A0A2W6N1N9	AAA family ATPase	NA
UHGV-0178608_1	eggNOG-mapper	195103.CPF_1612	NA	NA
UHGV-0178608_1	Pfam	PF13238	AAA domain	AAA_18
UHGV-0178608_1	Structural annotation	PF21448, MF_01111, TIGR01223, COG4088	NA	NA
UHGV-0178608_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178608_4	UniRef90	UniRef90_A0A2X2Y514	Lipoprotein	NA
UHGV-0178608_5	KOfam	K03976	ybaK, ebsC; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]	NA
UHGV-0178608_5	PHROG	phrog_17858	NA	unknown function
UHGV-0178608_5	UniRef90	UniRef90_A0A0H2YS73	YbaK/prolyl-tRNA synthetases associated domain protein	NA
UHGV-0178608_5	eggNOG-mapper	195103.CPF_1609	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily	NA
UHGV-0178608_5	Pfam	PF04073	Aminoacyl-tRNA editing domain	tRNA_edit
UHGV-0178608_5	COG	COG2606	Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC	NA
UHGV-0178608_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178608_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0178608_6	UniRef90	UniRef90_UPI001ABB50E1	recombinase family protein	NA
UHGV-0178608_6	eggNOG-mapper	195103.CPF_1608	Resolvase, N terminal domain	NA
UHGV-0178608_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178608_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178608_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178608_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0178608_7	PHROG	phrog_87	metallo-protease	other
UHGV-0178608_7	UniRef90	UniRef90_A0A0H2YNS0	Peptidase_M78 domain-containing protein	NA
UHGV-0178608_7	eggNOG-mapper	195103.CPF_1607	NA	NA
UHGV-0178608_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0178608_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0178608_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0178608_8	KOfam	K06926	NA	NA
UHGV-0178608_8	PHROG	phrog_5836	NA	unknown function
UHGV-0178608_8	UniRef90	UniRef90_UPI001D164010	ATP/GTP-binding protein	NA
UHGV-0178608_8	eggNOG-mapper	97139.C824_00425	AAA ATPase domain	NA
UHGV-0178608_8	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0178608_8	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0178608_8	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0178608_8	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-0178608_9	PHROG	phrog_16255	NA	unknown function
UHGV-0178608_9	UniRef90	UniRef90_UPI001D164478	RloB family protein	NA
UHGV-0178608_9	eggNOG-mapper	190304.FN1552	RloB-like protein	NA
UHGV-0178608_9	PADLOC	AbiLii-1	AbiLii	Abi
UHGV-0178608_9	Pfam	PF13707	RloB-like protein	RloB
UHGV-0178608_10	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0178608_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178608_10	UniRef90	UniRef90_A0A381J1Z3	DNA-binding protein	NA
UHGV-0178608_10	eggNOG-mapper	457396.CSBG_01029	sequence-specific DNA binding	NA
UHGV-0178608_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178608_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0178608_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178608_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178608_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0178608_11	UniRef90	UniRef90_A0A381J1N9	Tracriptional regulatory protein	NA
UHGV-0178608_11	eggNOG-mapper	632245.CLP_2950	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178608_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178608_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178608_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178608_12	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0178608_12	UniRef90	UniRef90_A0A0H2YTZ6	Conserved domain protein	NA
UHGV-0178608_12	eggNOG-mapper	195103.CPF_1602	sequence-specific DNA binding	NA
UHGV-0178608_12	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0178608_12	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0178608_14	PHROG	phrog_7199	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0178608_14	UniRef90	UniRef90_A0A0H2YQV0	Conserved domain protein	NA
UHGV-0178608_14	eggNOG-mapper	1211817.CCAT010000072_gene1153	NA	NA
UHGV-0178608_16	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178608_16	UniRef90	UniRef90_UPI0018E4A93D	conserved phage C-terminal domain-containing protein	NA
UHGV-0178608_16	eggNOG-mapper	195103.CPF_1598	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0178608_16	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0178608_16	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0178608_16	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0178608_16	Structural annotation	PF09524, PF02002, TIGR02220, TIGR02719, COG5625	NA	NA
UHGV-0178608_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178608_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178608_17	UniRef90	UniRef90_A0A0H2YRP5	DNA helicase	NA
UHGV-0178608_17	eggNOG-mapper	195103.CPF_1597	replicative DNA helicase	NA
UHGV-0178608_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178608_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178608_17	NCBIFam	TIGR03600.1	phage replicative helicase, DnaB family	NA
UHGV-0178608_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178608_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178608_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178608_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178608_19	UniRef90	UniRef90_A0A0H2YPA7	Single-stranded DNA-binding protein	NA
UHGV-0178608_19	eggNOG-mapper	195103.CPF_1595	Single-stranded DNA-binding protein	NA
UHGV-0178608_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178608_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178608_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178608_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178608_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178608_20	PHROG	phrog_10086	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178608_20	UniRef90	UniRef90_A0A8H9QX15	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0178608_20	Pfam	PF12802	MarR family	MarR_2
UHGV-0178608_20	COG	COG3888	Predicted transcriptional regulator	NA
UHGV-0178608_20	Structural annotation	PF01978, MF_01911, NF033789, COG0640	NA	NA
UHGV-0178608_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178608_21	UniRef90	UniRef90_A0A0H2YSY7	Putative DNA-binding protein	NA
UHGV-0178608_21	eggNOG-mapper	195103.CPF_1593	sigma factor activity	NA
UHGV-0178608_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178608_21	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0178608_22	eggNOG-mapper	195103.CPF_1592	NA	NA
UHGV-0178608_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0178608_23	PHROG	phrog_216	integrase	integration and excision
UHGV-0178608_23	UniRef90	UniRef90_A0A0H2YRA2	Site-specific recombinase, phage integrase family	NA
UHGV-0178608_23	eggNOG-mapper	195103.CPF_1590	integrase family	NA
UHGV-0178608_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178608_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178608_23	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0178608_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0178608_25	UniRef90	UniRef90_A0A8H9QW44	Phage terminase small subunit P27 family	NA
UHGV-0178608_25	eggNOG-mapper	195103.CPF_1588	Phage terminase, small subunit	NA
UHGV-0178608_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178608_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0178608_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0178608_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178608_26	UniRef90	UniRef90_A0A0H2YTC0	Putative phage terminase, large subunit	NA
UHGV-0178608_26	eggNOG-mapper	195103.CPF_1587	Terminase	NA
UHGV-0178608_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178608_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178608_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178608_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0178608_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178608_27	UniRef90	UniRef90_A0A8H9QXK7	Phage portal protein	NA
UHGV-0178608_27	eggNOG-mapper	195103.CPF_1586	Phage portal protein, HK97 family	NA
UHGV-0178608_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178608_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178608_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178608_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178608_28	KOfam	K06904	NA	NA
UHGV-0178608_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178608_28	UniRef90	UniRef90_A0A0H2YVM7	Phage prohead protease, HK97 family	NA
UHGV-0178608_28	eggNOG-mapper	195103.CPF_1585	Phage prohead protease, HK97 family	NA
UHGV-0178608_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178608_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178608_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0178608_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178608_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178608_29	UniRef90	UniRef90_A0A8H9QV47	Phage major capsid protein	NA
UHGV-0178608_29	eggNOG-mapper	195103.CPF_1584	Phage major capsid protein, HK97 family	NA
UHGV-0178608_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178608_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178608_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178608_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178608_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0178608_30	UniRef90	UniRef90_A0A8H9QVG1	Phage gp6-like head-tail connector protein	NA
UHGV-0178608_30	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0178608_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178608_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178608_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178608_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-0178608_31	UniRef90	UniRef90_A0A8H9QX25	Phage head closure protein	NA
UHGV-0178608_31	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0178608_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178608_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178608_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178608_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178608_32	UniRef90	UniRef90_A0A2X2Y077	HK97 family phage protein	NA
UHGV-0178608_32	eggNOG-mapper	195103.CPF_1581	Phage protein, HK97 gp10 family	NA
UHGV-0178608_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178608_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0178608_33	PHROG	phrog_78	tail terminator	connector
UHGV-0178608_33	UniRef90	UniRef90_Q8SBP4	Gp10 protein	NA
UHGV-0178608_33	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0178608_33	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0178608_34	PHROG	phrog_88	major tail protein	tail
UHGV-0178608_34	UniRef90	UniRef90_A0A8H9UWB3	Phage tail protein	NA
UHGV-0178608_34	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0178608_34	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0178608_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178608_34	COG	COG5492	NA	NA
UHGV-0178608_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0178608_35	PHROG	phrog_13494	NA	unknown function
UHGV-0178608_35	UniRef90	UniRef90_B1BUA8	Gp12 protein	NA
UHGV-0178608_35	eggNOG-mapper	195103.CPF_1578	NA	NA
UHGV-0178608_35	Structural annotation	PF20378	NA	NA
UHGV-0178608_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0178608_36	eggNOG-mapper	536233.CLO_1432	tail tape measure protein	NA
UHGV-0178608_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178608_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178608_36	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0178608_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0178608_37	UniRef90	UniRef90_UPI0018E4A997	phage tail tape measure protein	NA
UHGV-0178608_37	eggNOG-mapper	190478.Q8SBP1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0178608_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178608_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178608_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178608_38	UniRef90	UniRef90_UPI00115C0465	phage tail family protein	NA
UHGV-0178608_38	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0178608_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0178608_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0178608_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178608_39	UniRef90	UniRef90_UPI001C8620F2	Ig-like domain-containing protein	NA
UHGV-0178608_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178608_40	UniRef90	UniRef90_UPI00103B3F4C	phage tail protein	NA
UHGV-0178608_40	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-0178608_40	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0178608_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178608_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178608_40	COG	COG4926	Phage-related protein	NA
UHGV-0178608_41	PHROG	phrog_199	holin	lysis
UHGV-0178608_41	UniRef90	UniRef90_A0A8H9QW52	Phage holin family protein	NA
UHGV-0178608_41	eggNOG-mapper	1305708.M9Q253_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0178608_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178608_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178608_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178608_42	KOfam	K07273	acm; lysozyme	NA
UHGV-0178608_42	PHROG	phrog_291	endolysin	lysis
UHGV-0178608_42	UniRef90	UniRef90_A0A384TYD8	PlyCP10	NA
UHGV-0178608_42	eggNOG-mapper	396359.Q0SPG7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0178608_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178608_42	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0178608_42	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0178608_43	eggNOG-mapper	290402.Cbei_2519	NA	NA