UHGV-0178673

Genome information

Genome length 47,836 bps

CDS count 76

Completeness 100.00% (complete)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178673
vOTU ID	vOTU-046659
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579851
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.6
Jumbo phage	No

Genome content
Genome length	47,836 bps
GC content	45.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	89.17%
Average CDS length	564.59 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178673_1	PHROG	phrog_1233	NA	unknown function
UHGV-0178673_1	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0178673_3	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178673_3	UniRef90	UniRef90_UPI00164CF7CF	NUMOD4 domain-containing protein	NA
UHGV-0178673_3	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0178673_3	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0178673_3	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0178673_3	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0178673_3	Structural annotation	PF07453	NA	NA
UHGV-0178673_7	Structural annotation	PF21662, MF_00683, NF010673	NA	NA
UHGV-0178673_10	PHROG	phrog_1909	NA	unknown function
UHGV-0178673_10	Structural annotation	TIGR01651, COG4547	NA	NA
UHGV-0178673_11	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0178673_11	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0178673_11	UniRef90	UniRef90_UPI0006961AD7	AAA family ATPase	NA
UHGV-0178673_11	eggNOG-mapper	402612.FP2177	AAA domain (dynein-related subfamily)	NA
UHGV-0178673_11	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0178673_11	COG	COG0714	MoxR-like ATPase	NA
UHGV-0178673_11	Structural annotation	PF07728, MF_03121, TIGR02640, COG0714	NA	NA
UHGV-0178673_15	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178673_15	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0178673_15	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0178673_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178673_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178673_17	UniRef90	UniRef90_A0A316NVS3	DNA helicase	NA
UHGV-0178673_17	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0178673_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178673_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178673_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178673_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178673_20	PHROG	phrog_16304	NA	unknown function
UHGV-0178673_20	eggNOG-mapper	768706.Desor_0679	NA	NA
UHGV-0178673_22	Structural annotation	PF00436, MF_00984, NF005242, COG2965	NA	NA
UHGV-0178673_24	eggNOG-mapper	1449126.JQKL01000032_gene1263	NA	NA
UHGV-0178673_24	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0178673_25	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178673_25	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0178673_25	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178673_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178673_25	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0178673_26	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178673_26	UniRef90	UniRef90_UPI001ABE80F6	PD-(D/E)XK nuclease family protein	NA
UHGV-0178673_26	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0178673_26	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0178673_28	PHROG	phrog_9958	NA	unknown function
UHGV-0178673_28	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0178673_28	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0178673_28	Structural annotation	PF19789	NA	NA
UHGV-0178673_31	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0178673_31	Structural annotation	PF16225, TIGR04550, COG4226	NA	NA
UHGV-0178673_35	eggNOG-mapper	583355.Caka_1855	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0178673_35	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0178673_35	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0178673_36	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0178673_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178673_38	PHROG	phrog_16490	NA	unknown function
UHGV-0178673_38	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0178673_39	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0178673_40	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0178673_44	PHROG	phrog_1129	holin	lysis
UHGV-0178673_44	UniRef90	UniRef90_A0A316NUT2	Enolase	NA
UHGV-0178673_44	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0178673_44	Structural annotation	PF06946	NA	NA
UHGV-0178673_46	PHROG	phrog_32509	NA	unknown function
UHGV-0178673_46	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0178673_46	Structural annotation	PF10651	NA	NA
UHGV-0178673_47	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0178673_47	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0178673_47	UniRef90	UniRef90_A0A2V2FTH8	Peptidase M23	NA
UHGV-0178673_47	eggNOG-mapper	665956.HMPREF1032_01628	NA	NA
UHGV-0178673_47	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0178673_47	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0178673_48	PHROG	phrog_13589	NA	unknown function
UHGV-0178673_48	eggNOG-mapper	1499967.BAYZ01000016_gene6532	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0178673_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178673_51	PHROG	phrog_18190	NA	unknown function
UHGV-0178673_51	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0178673_51	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0178673_51	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0178673_52	PHROG	phrog_1194	NA	unknown function
UHGV-0178673_52	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0178673_52	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0178673_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178673_53	eggNOG-mapper	397288.C806_01518	Phage-related minor tail protein	NA
UHGV-0178673_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0178673_55	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0178673_56	PHROG	phrog_158	major tail protein	tail
UHGV-0178673_56	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0178673_56	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0178673_56	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0178673_57	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0178673_59	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178673_60	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0178673_60	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0178673_60	eggNOG-mapper	673832.D2IYW8_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0178673_60	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178673_60	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0178673_60	Structural annotation	TIGR01560	NA	NA
UHGV-0178673_61	PHROG	phrog_247	major head protein	head and packaging
UHGV-0178673_61	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0178673_61	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0178673_61	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0178673_61	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0178673_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178673_63	UniRef90	UniRef90_UPI001D06C00B	phage portal protein	NA
UHGV-0178673_63	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178673_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178673_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178673_65	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0178673_65	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0178673_65	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0178673_65	COG	COG5410	NA	NA
UHGV-0178673_65	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0178673_66	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178673_66	UniRef90	UniRef90_X8J8W0	DNA-binding helix-turn-helix protein	NA
UHGV-0178673_66	eggNOG-mapper	1235800.C819_03774	NA	NA
UHGV-0178673_66	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178673_66	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178673_66	Structural annotation	PF01978, TIGR04176, COG3355	NA	NA
UHGV-0178673_68	Structural annotation	PF17613, COG2139	NA	NA
UHGV-0178673_71	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0178673_71	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0178673_71	UniRef90	UniRef90_A0A6A2VG41	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0178673_71	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0178673_71	Pfam	PF00692	dUTPase	dUTPase
UHGV-0178673_71	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0178673_71	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0178673_71	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0178673_73	PHROG	phrog_236	nucleotide kinase	other
UHGV-0178673_73	UniRef90	UniRef90_A0A7Y4YH51	NA	NA
UHGV-0178673_73	eggNOG-mapper	397290.C810_01372	NA	NA
UHGV-0178673_73	Pfam	PF11753	NA	DUF3310
UHGV-0178673_74	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0178673_74	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0178673_74	UniRef90	UniRef90_A0A2A7ALC5	Flavin-dependent thymidylate synthase	NA
UHGV-0178673_74	eggNOG-mapper	657322.FPR_23400	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0178673_74	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0178673_74	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0178673_74	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0178673_74	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0178673_74	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA