UHGV-0178692

Genome information

Genome length 41,160 bps

CDS count 56

Completeness 93.75% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178692
vOTU ID	vOTU-063761
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577764
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.49
Jumbo phage	No

Genome content
Genome length	41,160 bps
GC content	39.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.28%
Average CDS length	667.50 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178692_2	PHROG	phrog_2277	NA	unknown function
UHGV-0178692_2	eggNOG-mapper	1122146.AUHP01000011_gene254	NA	NA
UHGV-0178692_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0178692_5	PHROG	phrog_291	endolysin	lysis
UHGV-0178692_5	UniRef90	UniRef90_A0A4Q0LVG2	Lysin	NA
UHGV-0178692_5	eggNOG-mapper	891391.LAC30SC_06450	hydrolase, family 25	NA
UHGV-0178692_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178692_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178692_5	Structural annotation	PF01183, NF033379, COG3757	NA	NA
UHGV-0178692_6	PHROG	phrog_2609	holin	lysis
UHGV-0178692_6	UniRef90	UniRef90_A0A2V4F5N6	Phage holin	NA
UHGV-0178692_6	eggNOG-mapper	891391.LAC30SC_06455	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0178692_6	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0178692_6	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0178692_6	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0178692_8	PHROG	phrog_4325	holin	lysis
UHGV-0178692_8	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0178692_9	UniRef90	UniRef90_A0A7H9E8L5	XkdX family protein	NA
UHGV-0178692_10	PHROG	phrog_34343	NA	unknown function
UHGV-0178692_11	UniRef90	UniRef90_UPI001F0969F8	pyocin knob domain-containing protein	NA
UHGV-0178692_14	PHROG	phrog_4467	NA	unknown function
UHGV-0178692_14	UniRef90	UniRef90_UPI001F08C694	NA	NA
UHGV-0178692_14	eggNOG-mapper	1122147.AUEH01000027_gene2733	NA	NA
UHGV-0178692_15	PHROG	phrog_3335	NA	unknown function
UHGV-0178692_16	PHROG	phrog_12493	tail protein	tail
UHGV-0178692_16	UniRef90	UniRef90_UPI000554DA0D	endopeptidase	NA
UHGV-0178692_16	eggNOG-mapper	1423767.BALU01000006_gene762	Phage minor structural protein	NA
UHGV-0178692_16	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0178692_16	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0178692_16	COG	COG4926	Phage-related protein	NA
UHGV-0178692_16	Structural annotation	PF14594, PF19087, TIGR01665, NF038016, COG4926	NA	NA
UHGV-0178692_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178692_17	UniRef90	UniRef90_UPI001F091E09	phage tail protein	NA
UHGV-0178692_17	eggNOG-mapper	1423767.BALU01000006_gene763	phage tail	NA
UHGV-0178692_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0178692_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178692_17	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0178692_18	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0178692_18	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0178692_18	UniRef90	UniRef90_UPI00136A28C2	phage tail tip lysozyme	NA
UHGV-0178692_18	eggNOG-mapper	1423767.BALU01000006_gene765	domain protein	NA
UHGV-0178692_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0178692_18	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0178692_18	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0178692_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0178692_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0178692_19	PHROG	phrog_706	NA	unknown function
UHGV-0178692_19	UniRef90	UniRef90_UPI0001B2AE23	Gp15 family bacteriophage protein	NA
UHGV-0178692_19	eggNOG-mapper	1423767.BALU01000006_gene766	Bacteriophage Gp15 protein	NA
UHGV-0178692_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178692_19	Structural annotation	PF06854	NA	NA
UHGV-0178692_20	PHROG	phrog_32864	NA	unknown function
UHGV-0178692_20	eggNOG-mapper	1423790.BN53_04190	NA	NA
UHGV-0178692_21	PHROG	phrog_820	major tail protein	tail
UHGV-0178692_21	UniRef90	UniRef90_UPI001F17F79C	phage capsid protein	NA
UHGV-0178692_21	eggNOG-mapper	1423767.BALU01000006_gene768	domain, Protein	NA
UHGV-0178692_21	COG	COG5492	NA	NA
UHGV-0178692_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178692_22	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0178692_22	UniRef90	UniRef90_UPI000CA21340	phage capsid protein	NA
UHGV-0178692_22	eggNOG-mapper	1423790.BN53_04205	Minor capsid protein from bacteriophage	NA
UHGV-0178692_22	Structural annotation	PF12691	NA	NA
UHGV-0178692_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178692_23	UniRef90	UniRef90_UPI0018E3E958	minor capsid protein	NA
UHGV-0178692_23	eggNOG-mapper	1423790.BN53_04210	Minor capsid protein	NA
UHGV-0178692_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178692_23	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0178692_24	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0178692_24	UniRef90	UniRef90_UPI0018E301FA	putative minor capsid protein	NA
UHGV-0178692_24	eggNOG-mapper	1423767.BALU01000006_gene771	Minor capsid protein	NA
UHGV-0178692_24	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0178692_24	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0178692_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178692_25	eggNOG-mapper	1423767.BALU01000006_gene772	NA	NA
UHGV-0178692_26	PHROG	phrog_247	major head protein	head and packaging
UHGV-0178692_26	UniRef90	UniRef90_UPI00106041D3	replication protein	NA
UHGV-0178692_26	eggNOG-mapper	1423767.BALU01000006_gene773	NA	NA
UHGV-0178692_26	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0178692_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178692_27	UniRef90	UniRef90_UPI001CC74605	phage scaffolding protein	NA
UHGV-0178692_27	eggNOG-mapper	1423767.BALU01000006_gene774	Phage minor structural protein GP20	NA
UHGV-0178692_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178692_27	Structural annotation	PF06810	NA	NA
UHGV-0178692_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178692_29	UniRef90	UniRef90_A0A2V4EFH4	Minor capsid protein	NA
UHGV-0178692_29	eggNOG-mapper	1423767.BALU01000006_gene776	Phage minor capsid protein 2	NA
UHGV-0178692_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178692_29	Structural annotation	PF06152	NA	NA
UHGV-0178692_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178692_30	UniRef90	UniRef90_A0A2V4EMQ7	Phage portal protein	NA
UHGV-0178692_30	eggNOG-mapper	1423790.BN53_04240	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178692_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178692_30	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0178692_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178692_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178692_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178692_31	UniRef90	UniRef90_U6F397	Phage-related terminase, large subunit	NA
UHGV-0178692_31	eggNOG-mapper	1423767.BALU01000006_gene778	Terminase RNAseH like domain	NA
UHGV-0178692_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178692_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178692_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178692_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178692_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178692_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0178692_32	UniRef90	UniRef90_A0A7H9E9J7	Terminase	NA
UHGV-0178692_32	eggNOG-mapper	1423767.BALU01000006_gene779	transposase activity	NA
UHGV-0178692_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0178692_33	PHROG	phrog_9353	NA	unknown function
UHGV-0178692_33	UniRef90	UniRef90_UPI001368D4A9	ParB N-terminal domain-containing protein	NA
UHGV-0178692_33	eggNOG-mapper	1423767.BALU01000006_gene783	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0178692_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0178692_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178692_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178692_33	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0178692_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178692_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178692_35	UniRef90	UniRef90_E4SKR9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178692_35	eggNOG-mapper	1423767.BALU01000006_gene787	sulfate reduction	NA
UHGV-0178692_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178692_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178692_35	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0178692_36	PHROG	phrog_3193	NA	unknown function
UHGV-0178692_36	UniRef90	UniRef90_UPI0001B2AE59	ASCH domain-containing protein	NA
UHGV-0178692_36	eggNOG-mapper	891391.LAC30SC_07860	ASCH domain	NA
UHGV-0178692_36	Pfam	PF04266	ASCH domain	ASCH
UHGV-0178692_36	Structural annotation	PF07370, MF_00684, NF003443, COG4293	NA	NA
UHGV-0178692_37	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0178692_37	UniRef90	UniRef90_E4SKS2	Phage related protein	NA
UHGV-0178692_37	eggNOG-mapper	257314.LJ_0303	NA	NA
UHGV-0178692_37	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0178692_39	PHROG	phrog_16953	NA	unknown function
UHGV-0178692_39	eggNOG-mapper	139871.A9D9Q0_9VIRU	NA	NA
UHGV-0178692_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178692_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178692_45	UniRef90	UniRef90_UPI0001B2AE62	DnaA/Hda family protein	NA
UHGV-0178692_45	eggNOG-mapper	1423754.BALY01000011_gene302	IstB-like ATP binding protein	NA
UHGV-0178692_45	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0178692_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178692_45	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0178692_46	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178692_46	UniRef90	UniRef90_UPI0001B2AE63	conserved phage C-terminal domain-containing protein	NA
UHGV-0178692_46	eggNOG-mapper	363555.Q20DG1_9CAUD	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0178692_46	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178692_46	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0178692_46	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0178692_46	Structural annotation	PF09524, PF04703, TIGR02220, NF040939, COG3355	NA	NA
UHGV-0178692_47	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178692_47	UniRef90	UniRef90_A0A8F1Z3K5	NA	NA
UHGV-0178692_47	eggNOG-mapper	1423767.BALU01000006_gene801	NA	NA
UHGV-0178692_47	Pfam	PF06378	NA	DUF1071
UHGV-0178692_48	PHROG	phrog_7634	NA	unknown function
UHGV-0178692_49	PHROG	phrog_22222	NA	unknown function
UHGV-0178692_50	PHROG	phrog_22509	NA	unknown function
UHGV-0178692_51	PHROG	phrog_15708	NA	unknown function
UHGV-0178692_51	eggNOG-mapper	891391.LAC30SC_06665	NA	NA
UHGV-0178692_52	UniRef90	UniRef90_A0A2V4ED65	DNA-binding protein	NA
UHGV-0178692_52	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0178692_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178692_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0178692_53	UniRef90	UniRef90_UPI001CC6D39C	phage antirepressor	NA
UHGV-0178692_53	eggNOG-mapper	891391.LAC30SC_06695	BRO family, N-terminal domain	NA
UHGV-0178692_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178692_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178692_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0178692_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0178692_54	UniRef90	UniRef90_UPI0001B2AE6A	helix-turn-helix domain-containing protein	NA
UHGV-0178692_54	eggNOG-mapper	411465.PEPMIC_00039	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178692_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178692_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178692_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178692_55	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0178692_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178692_55	UniRef90	UniRef90_UPI001060EAE7	helix-turn-helix domain-containing protein	NA
UHGV-0178692_55	eggNOG-mapper	1419814.V470_06145	Transcriptional	NA
UHGV-0178692_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178692_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178692_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178692_56	PHROG	phrog_87	metallo-protease	other
UHGV-0178692_56	UniRef90	UniRef90_A0A6A1Z507	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0178692_56	eggNOG-mapper	1423755.BAML01000004_gene414	IrrE N-terminal-like domain	NA
UHGV-0178692_56	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA