UHGV-0178729

Genome information

Genome length 45,878 bps

CDS count 80

Completeness 52.60% (medium-quality)

geNomad score 0.9581

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178729
vOTU ID	vOTU-029036
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578976
BioSample	SAMN07501039
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9581
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.84
Jumbo phage	No

Genome content
Genome length	45,878 bps
GC content	36.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	89.59%
Average CDS length	518.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178729_2	PHROG	phrog_6616	tail protein	tail
UHGV-0178729_2	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-0178729_2	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0178729_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0178729_3	PHROG	phrog_1194	NA	unknown function
UHGV-0178729_3	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0178729_3	Pfam	PF20458	NA	DUF6711
UHGV-0178729_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178729_4	PHROG	phrog_2546	NA	unknown function
UHGV-0178729_4	UniRef90	UniRef90_UPI0011AF1FA8	zinc ribbon domain-containing protein	NA
UHGV-0178729_4	eggNOG-mapper	1391647.AVSV01000021_gene2233	NA	NA
UHGV-0178729_4	Structural annotation	PF13240	NA	NA
UHGV-0178729_5	PHROG	phrog_28918	NA	unknown function
UHGV-0178729_5	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0178729_5	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0178729_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0178729_7	PHROG	phrog_36112	NA	unknown function
UHGV-0178729_7	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0178729_8	PHROG	phrog_158	major tail protein	tail
UHGV-0178729_8	UniRef90	UniRef90_A0A7G5N1B9	Phage tail protein	NA
UHGV-0178729_8	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0178729_8	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0178729_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0178729_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0178729_10	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0178729_11	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0178729_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178729_12	Structural annotation	NF040910	NA	NA
UHGV-0178729_15	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0178729_16	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0178729_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0178729_18	UniRef90	UniRef90_UPI00085C6894	major capsid protein	NA
UHGV-0178729_18	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0178729_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0178729_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0178729_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-0178729_19	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0178729_19	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0178729_20	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0178729_20	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0178729_20	Structural annotation	PF14265	NA	NA
UHGV-0178729_21	Structural annotation	COG4416	NA	NA
UHGV-0178729_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178729_22	UniRef90	UniRef90_UPI00085BD23D	phage portal protein	NA
UHGV-0178729_22	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178729_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178729_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178729_23	UniRef90	UniRef90_UPI000CF88F65	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0178729_23	eggNOG-mapper	1232453.BAIF02000058_gene1624	NA	NA
UHGV-0178729_23	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0178729_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0178729_24	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0178729_24	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0178729_24	COG	COG5410	NA	NA
UHGV-0178729_24	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0178729_28	PHROG	phrog_1810	NA	unknown function
UHGV-0178729_28	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0178729_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0178729_29	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0178729_29	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0178729_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0178729_29	Structural annotation	PF16677	NA	NA
UHGV-0178729_31	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0178729_31	UniRef90	UniRef90_UPI00085C848E	Rha family transcriptional regulator	NA
UHGV-0178729_31	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0178729_31	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0178729_31	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0178729_32	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178729_32	UniRef90	UniRef90_UPI00085C7543	helix-turn-helix transcriptional regulator	NA
UHGV-0178729_32	eggNOG-mapper	397290.C810_01714	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0178729_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178729_33	AcrCatalog	cluster_67405	NA	NA
UHGV-0178729_35	UniRef90	UniRef90_UPI00085C8CF9	MYG1 family protein	NA
UHGV-0178729_35	eggNOG-mapper	1235835.C814_01832	Uncharacterised protein family (UPF0160)	NA
UHGV-0178729_35	Pfam	PF03690	Uncharacterised protein family (UPF0160)	UPF0160
UHGV-0178729_35	COG	COG4286	NA	NA
UHGV-0178729_35	Structural annotation	PF03690, COG4286	NA	NA
UHGV-0178729_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178729_36	UniRef90	UniRef90_UPI000F638571	DNA cytosine methyltransferase	NA
UHGV-0178729_36	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178729_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178729_38	PHROG	phrog_8684	NA	unknown function
UHGV-0178729_38	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0178729_38	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0178729_38	Pfam	PF09643	YopX protein	YopX
UHGV-0178729_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0178729_41	eggNOG-mapper	1499683.CCFF01000005_gene42	NA	NA
UHGV-0178729_45	Structural annotation	PF16467	NA	NA
UHGV-0178729_47	PHROG	phrog_2600	NA	unknown function
UHGV-0178729_47	eggNOG-mapper	1122947.FR7_2511	NA	NA
UHGV-0178729_49	UniRef90	UniRef90_A0A0J1J397	HTH_7 domain-containing protein	NA
UHGV-0178729_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0178729_50	PHROG	phrog_3502	NA	unknown function
UHGV-0178729_50	UniRef90	UniRef90_A0A0J1G875	LexA_DNA_bind domain-containing protein	NA
UHGV-0178729_50	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-0178729_50	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0178729_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178729_51	PHROG	phrog_26824	NA	unknown function
UHGV-0178729_51	UniRef90	UniRef90_UPI001AE7C6D7	DNA primase	NA
UHGV-0178729_51	eggNOG-mapper	203119.Cthe_1888	DNA primase activity	NA
UHGV-0178729_51	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0178729_53	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0178729_53	PHROG	phrog_11992	NA	unknown function
UHGV-0178729_53	UniRef90	UniRef90_UPI00085BBC41	CHC2 zinc finger domain-containing protein	NA
UHGV-0178729_53	eggNOG-mapper	397287.C807_02669	CHC2 zinc finger	NA
UHGV-0178729_53	PADLOC	drt-UG29	DRT	DRT
UHGV-0178729_53	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0178729_53	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0178729_53	Structural annotation	PF01807	NA	NA
UHGV-0178729_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0178729_54	UniRef90	UniRef90_R6V942	ERCC4 domain-containing protein	NA
UHGV-0178729_54	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0178729_54	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0178729_55	eggNOG-mapper	1298920.KI911353_gene2716	NA	NA
UHGV-0178729_55	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0178729_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178729_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178729_56	UniRef90	UniRef90_UPI00085CCD53	single-stranded DNA-binding protein	NA
UHGV-0178729_56	eggNOG-mapper	180332.JTGN01000013_gene949	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178729_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178729_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178729_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178729_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178729_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178729_58	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0178729_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0178729_58	UniRef90	UniRef90_UPI00085C49F4	MBL fold metallo-hydrolase	NA
UHGV-0178729_58	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-0178729_58	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0178729_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0178729_58	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0178729_59	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0178729_59	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178729_59	UniRef90	UniRef90_UPI0009F44916	recombinase RecT	NA
UHGV-0178729_59	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0178729_59	Pfam	PF03837	RecT family	RecT
UHGV-0178729_59	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0178729_59	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0178729_59	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0178729_61	Structural annotation	PF19157	NA	NA
UHGV-0178729_62	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178729_62	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-0178729_62	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0178729_62	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178729_62	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0178729_64	PHROG	phrog_4292	NA	unknown function
UHGV-0178729_64	eggNOG-mapper	478749.BRYFOR_08549	NA	NA
UHGV-0178729_71	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178729_71	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0178729_72	PHROG	phrog_6058	NA	unknown function
UHGV-0178729_72	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0178729_72	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0178729_72	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0178729_77	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-0178729_77	UniRef90	UniRef90_UPI0004840AE0	Bro-N domain-containing protein	NA
UHGV-0178729_77	eggNOG-mapper	1449050.JNLE01000005_gene3959	BRO family, N-terminal domain	NA
UHGV-0178729_77	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178729_77	COG	COG3617	Prophage antirepressor	NA
UHGV-0178729_77	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-0178729_79	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0178729_79	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0178729_79	UniRef90	UniRef90_UPI001D5A1FD7	helix-turn-helix transcriptional regulator	NA
UHGV-0178729_79	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178729_79	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0178729_79	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178729_79	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0178729_80	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0178729_80	PHROG	phrog_8810	NA	unknown function
UHGV-0178729_80	UniRef90	UniRef90_UPI00085C7DA6	LytTR family DNA-binding domain-containing protein	NA
UHGV-0178729_80	eggNOG-mapper	622312.ROSEINA2194_02040	LytTr DNA-binding domain	NA
UHGV-0178729_80	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0178729_80	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0178729_80	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0178729_80	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA