UHGV-0178740

Genome information

Genome length 38,527 bps

CDS count 60

Completeness 96.90% (high-quality)

geNomad score 0.9626

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178740
vOTU ID	vOTU-060612
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578974
BioSample	SAMN07501039
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9626
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.68
Jumbo phage	No

Genome content
Genome length	38,527 bps
GC content	29.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.78%
Average CDS length	580.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178740_1	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0178740_1	UniRef90	UniRef90_UPI0018AB50F8	ORF6C domain-containing protein	NA
UHGV-0178740_1	eggNOG-mapper	318464.IO99_00440	ORF6N domain	NA
UHGV-0178740_1	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0178740_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0178740_1	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0178740_1	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0178740_7	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178740_7	UniRef90	UniRef90_UPI001AE7AE43	host-nuclease inhibitor Gam family protein	NA
UHGV-0178740_7	eggNOG-mapper	1415774.U728_1122	Bacteriophage Mu Gam like protein	NA
UHGV-0178740_7	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0178740_7	Structural annotation	PF07352	NA	NA
UHGV-0178740_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178740_9	UniRef90	UniRef90_UPI00189AE10B	ERF family protein	NA
UHGV-0178740_9	eggNOG-mapper	536232.CLM_1632	ERF superfamily	NA
UHGV-0178740_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178740_9	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0178740_10	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178740_10	UniRef90	UniRef90_A0A1M6K2Y5	DnaA N-terminal domain-containing protein	NA
UHGV-0178740_10	eggNOG-mapper	1415774.U728_770	DnaD domain protein	NA
UHGV-0178740_10	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0178740_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178740_10	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0178740_11	PHROG	phrog_3497	NA	unknown function
UHGV-0178740_11	UniRef90	UniRef90_A0A174EZL9	NA	NA
UHGV-0178740_11	eggNOG-mapper	1280689.AUJC01000003_gene939	NA	NA
UHGV-0178740_11	Structural annotation	COG5126	NA	NA
UHGV-0178740_12	PHROG	phrog_98	NA	unknown function
UHGV-0178740_12	UniRef90	UniRef90_UPI001897BCF5	YopX family protein	NA
UHGV-0178740_12	eggNOG-mapper	1499683.CCFF01000005_gene57	YopX protein	NA
UHGV-0178740_12	Pfam	PF09643	YopX protein	YopX
UHGV-0178740_12	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0178740_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0178740_13	PHROG	phrog_1389	NA	unknown function
UHGV-0178740_13	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0178740_13	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0178740_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0178740_14	UniRef90	UniRef90_A0A0M0AD71	Replication terminator protein	NA
UHGV-0178740_14	eggNOG-mapper	1415774.U728_1693	replication terminator protein, phage associated	NA
UHGV-0178740_15	PHROG	phrog_1029	NA	unknown function
UHGV-0178740_15	eggNOG-mapper	1280689.AUJC01000003_gene944	NA	NA
UHGV-0178740_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0178740_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178740_16	UniRef90	UniRef90_UPI001E5D92BC	NA	NA
UHGV-0178740_16	eggNOG-mapper	1280689.AUJC01000003_gene945	NA	NA
UHGV-0178740_16	Pfam	PF06356	NA	DUF1064
UHGV-0178740_16	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0178740_17	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178740_17	eggNOG-mapper	1196322.A370_02042	NA	NA
UHGV-0178740_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178740_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178740_18	UniRef90	UniRef90_UPI00115BA27E	single-stranded DNA-binding protein	NA
UHGV-0178740_18	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-0178740_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178740_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178740_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178740_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178740_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178740_19	PHROG	phrog_33582	NA	unknown function
UHGV-0178740_19	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0178740_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178740_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178740_20	UniRef90	UniRef90_UPI001159E17E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0178740_20	eggNOG-mapper	1196322.A370_02048	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178740_20	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0178740_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178740_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178740_20	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0178740_21	eggNOG-mapper	1443125.Z962_p0038	NA	NA
UHGV-0178740_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178740_23	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0178740_23	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0178740_23	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0178740_24	PHROG	phrog_18591	NA	unknown function
UHGV-0178740_24	eggNOG-mapper	935837.JAEK01000049_gene899	NA	NA
UHGV-0178740_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178740_25	UniRef90	UniRef90_UPI0018A8ECDF	transcriptional regulator	NA
UHGV-0178740_25	eggNOG-mapper	1391647.AVSV01000022_gene2550	NA	NA
UHGV-0178740_25	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0178740_25	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0178740_29	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0178740_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0178740_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178740_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0178740_30	UniRef90	UniRef90_UPI001C8E62FA	terminase small subunit	NA
UHGV-0178740_30	eggNOG-mapper	1280692.AUJL01000027_gene2167	Terminase small subunit	NA
UHGV-0178740_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178740_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178740_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0178740_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178740_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0178740_31	UniRef90	UniRef90_A0A4U9RDJ0	Phage terminase, large subunit	NA
UHGV-0178740_31	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0178740_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178740_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178740_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178740_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178740_32	UniRef90	UniRef90_UPI001F31C545	capsid protein	NA
UHGV-0178740_32	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0178740_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178740_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178740_33	UniRef90	UniRef90_UPI001E61F483	capsid protein	NA
UHGV-0178740_33	eggNOG-mapper	1294142.CINTURNW_1025	NA	NA
UHGV-0178740_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178740_33	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0178740_34	PHROG	phrog_6332	NA	unknown function
UHGV-0178740_34	UniRef90	UniRef90_A0A645CQT4	Cys_rich_CPCC domain-containing protein	NA
UHGV-0178740_34	eggNOG-mapper	1294142.CINTURNW_1026	Cysteine-rich CPCC	NA
UHGV-0178740_34	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0178740_35	PHROG	phrog_2428	NA	unknown function
UHGV-0178740_35	UniRef90	UniRef90_UPI0007E0147E	ABC transporter ATPase	NA
UHGV-0178740_35	eggNOG-mapper	445335.CBN_2988	NA	NA
UHGV-0178740_35	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0178740_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0178740_36	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0178740_36	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0178740_36	Structural annotation	PF10788	NA	NA
UHGV-0178740_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0178740_37	UniRef90	UniRef90_UPI000C07344A	capsid protein	NA
UHGV-0178740_37	eggNOG-mapper	1280692.AUJL01000027_gene2160	NA	NA
UHGV-0178740_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178740_38	PHROG	phrog_1378	NA	unknown function
UHGV-0178740_38	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0178740_38	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0178740_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178740_39	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0178740_40	PHROG	phrog_8710	NA	unknown function
UHGV-0178740_40	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0178740_40	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0178740_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0178740_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178740_41	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0178740_41	eggNOG-mapper	1280692.AUJL01000027_gene2156	Minor capsid protein	NA
UHGV-0178740_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0178740_42	UniRef90	UniRef90_UPI000C08D995	minor capsid protein	NA
UHGV-0178740_42	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0178740_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0178740_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0178740_43	PHROG	phrog_820	major tail protein	tail
UHGV-0178740_43	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0178740_43	COG	COG5492	NA	NA
UHGV-0178740_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178740_44	PHROG	phrog_8300	NA	unknown function
UHGV-0178740_44	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0178740_44	Structural annotation	PF06896	NA	NA
UHGV-0178740_45	PHROG	phrog_8355	NA	unknown function
UHGV-0178740_45	UniRef90	UniRef90_A0A1I2KU85	Bacteriophage Gp15 protein	NA
UHGV-0178740_45	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0178740_45	Structural annotation	PF06854	NA	NA
UHGV-0178740_46	PHROG	phrog_888	NA	unknown function
UHGV-0178740_46	UniRef90	UniRef90_UPI000DCFA674	SHOCT domain-containing protein	NA
UHGV-0178740_46	eggNOG-mapper	565664.EFXG_01134	Short C-terminal domain	NA
UHGV-0178740_46	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0178740_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178740_47	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0178740_47	eggNOG-mapper	1294142.CINTURNW_1038	phage tail tape measure protein	NA
UHGV-0178740_47	COG	COG1511	NA	NA
UHGV-0178740_48	PHROG	phrog_1194	NA	unknown function
UHGV-0178740_48	eggNOG-mapper	1280689.AUJC01000003_gene977	NA	NA
UHGV-0178740_48	Pfam	PF20458	NA	DUF6711
UHGV-0178740_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178740_49	eggNOG-mapper	1280692.AUJL01000027_gene2146	NA	NA
UHGV-0178740_50	PHROG	phrog_1401	NA	unknown function
UHGV-0178740_50	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0178740_50	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-0178740_50	Structural annotation	PF07761	NA	NA
UHGV-0178740_51	PHROG	phrog_16267	NA	unknown function
UHGV-0178740_51	UniRef90	UniRef90_UPI001C1E1ED3	phage tail protein	NA
UHGV-0178740_51	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0178740_51	COG	COG4926	Phage-related protein	NA
UHGV-0178740_51	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0178740_52	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0178740_52	eggNOG-mapper	457396.CSBG_01061	NA	NA
UHGV-0178740_53	PHROG	phrog_13256	NA	unknown function
UHGV-0178740_53	eggNOG-mapper	457396.CSBG_01062	NA	NA
UHGV-0178740_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178740_54	PHROG	phrog_12727	endolysin	lysis
UHGV-0178740_54	UniRef90	UniRef90_UPI00115BF697	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178740_54	eggNOG-mapper	1540257.JQMW01000009_gene2672	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178740_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178740_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178740_54	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0178740_55	PHROG	phrog_1281	NA	unknown function
UHGV-0178740_55	UniRef90	UniRef90_A0A645AHE9	NA	NA
UHGV-0178740_55	eggNOG-mapper	1123263.AUKY01000111_gene1090	NA	NA
UHGV-0178740_55	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0178740_55	COG	COG3600	NA	NA
UHGV-0178740_55	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0178740_56	PHROG	phrog_5763	NA	unknown function
UHGV-0178740_56	eggNOG-mapper	1211844.CBLM010000016_gene1501	NA	NA
UHGV-0178740_56	Structural annotation	NF011158	NA	NA
UHGV-0178740_57	UniRef90	UniRef90_UPI00115B56BE	helix-turn-helix domain-containing protein	NA
UHGV-0178740_57	eggNOG-mapper	1211817.CCAT010000003_gene264	Helix-turn-helix domain	NA
UHGV-0178740_57	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0178740_57	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0178740_58	UniRef90	UniRef90_UPI000DD0DDC7	NA	NA
UHGV-0178740_58	eggNOG-mapper	1415775.U729_1741	NA	NA
UHGV-0178740_58	Pfam	PF07485	NA	DUF1529
UHGV-0178740_58	COG	COG1388	LysM repeat	NA
UHGV-0178740_59	eggNOG-mapper	457396.CSBG_02426	NA	NA
UHGV-0178740_60	PHROG	phrog_20258	NA	unknown function
UHGV-0178740_60	eggNOG-mapper	457396.CSBG_02425	NA	NA