UHGV-0178754

Genome information

Genome length 32,422 bps

CDS count 47

Completeness 95.62% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178754
vOTU ID	vOTU-010999
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588398
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.36
Jumbo phage	No

Genome content
Genome length	32,422 bps
GC content	49.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.06%
Average CDS length	616.34 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178754_1	UniRef90	UniRef90_UPI001C11CC5A	sulfite exporter TauE/SafE family protein	NA
UHGV-0178754_1	eggNOG-mapper	877420.ATVW01000017_gene1709	NA	NA
UHGV-0178754_2	UniRef90	UniRef90_A0A7U6QHM4	Small membrane protein	NA
UHGV-0178754_2	eggNOG-mapper	622312.ROSEINA2194_00531	NA	NA
UHGV-0178754_4	PHROG	phrog_20388	endolysin	lysis
UHGV-0178754_4	UniRef90	UniRef90_A0A2I0N350	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0178754_4	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0178754_4	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0178754_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0178754_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178754_5	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0178754_7	PHROG	phrog_11262	tail protein	tail
UHGV-0178754_7	UniRef90	UniRef90_A0A3A9C023	FGE-sulfatase domain-containing protein	NA
UHGV-0178754_7	eggNOG-mapper	411470.RUMGNA_02081	NA	NA
UHGV-0178754_7	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0178754_7	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-0178754_8	eggNOG-mapper	411470.RUMGNA_02080	methionine--tRNA ligase (methionine tRNA synthetase) K01874	NA
UHGV-0178754_8	Structural annotation	PF13753, NF009633	NA	NA
UHGV-0178754_9	PHROG	phrog_1220	head protein	head and packaging
UHGV-0178754_9	eggNOG-mapper	411470.RUMGNA_02079	COG NOG18825 non supervised orthologous group	NA
UHGV-0178754_9	Structural annotation	PF20747	NA	NA
UHGV-0178754_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0178754_10	UniRef90	UniRef90_UPI001111490C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0178754_10	eggNOG-mapper	397290.C810_00431	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0178754_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0178754_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178754_11	PHROG	phrog_36410	NA	unknown function
UHGV-0178754_11	UniRef90	UniRef90_A0A1Y4IB55	Phage tail protein	NA
UHGV-0178754_11	eggNOG-mapper	397290.C810_00430	Phage tail protein	NA
UHGV-0178754_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0178754_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178754_11	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0178754_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0178754_12	UniRef90	UniRef90_A0A1Y4I6K4	PhageMin_Tail domain-containing protein (Fragment)	NA
UHGV-0178754_12	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0178754_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178754_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0178754_13	PHROG	phrog_2115	tail protein	tail
UHGV-0178754_13	eggNOG-mapper	397290.C810_00428	NA	NA
UHGV-0178754_13	Structural annotation	PF11836	NA	NA
UHGV-0178754_14	PHROG	phrog_88	major tail protein	tail
UHGV-0178754_14	UniRef90	UniRef90_A0A1Y4IGH4	Phage tail protein	NA
UHGV-0178754_14	eggNOG-mapper	397290.C810_00427	phage major tail protein, phi13 family	NA
UHGV-0178754_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178754_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0178754_15	eggNOG-mapper	411470.RUMGNA_02072	NA	NA
UHGV-0178754_15	Structural annotation	PF05657, NF040576, COG3978	NA	NA
UHGV-0178754_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178754_16	UniRef90	UniRef90_R9KQ46	HK97 gp10 family phage protein	NA
UHGV-0178754_16	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0178754_16	Structural annotation	TIGR01725	NA	NA
UHGV-0178754_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0178754_17	UniRef90	UniRef90_A0A6N7WPN6	Phage head closure protein	NA
UHGV-0178754_17	eggNOG-mapper	397290.C810_00424	NA	NA
UHGV-0178754_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178754_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178754_18	PHROG	phrog_5223	neck protein	connector
UHGV-0178754_18	UniRef90	UniRef90_A0A3A9T3V2	DNA-packaging protein	NA
UHGV-0178754_18	eggNOG-mapper	397290.C810_00423	NA	NA
UHGV-0178754_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178754_20	UniRef90	UniRef90_A0A6B9ST82	Capsid protein	NA
UHGV-0178754_20	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0178754_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178754_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178754_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178754_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178754_21	KOfam	K06904	NA	NA
UHGV-0178754_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178754_21	UniRef90	UniRef90_A0A416UF36	HK97 family phage prohead protease	NA
UHGV-0178754_21	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0178754_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178754_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178754_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0178754_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178754_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178754_22	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-0178754_22	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0178754_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178754_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178754_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178754_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178754_23	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-0178754_23	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0178754_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178754_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178754_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178754_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0178754_24	PHROG	phrog_1066	NA	unknown function
UHGV-0178754_24	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0178754_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0178754_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178754_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178754_25	UniRef90	UniRef90_A0A1Y4I6X7	HNH endonuclease	NA
UHGV-0178754_25	eggNOG-mapper	411470.RUMGNA_02060	HNH endonuclease	NA
UHGV-0178754_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178754_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178754_26	PHROG	phrog_1558	NA	unknown function
UHGV-0178754_26	UniRef90	UniRef90_A0A6B9SRU0	RNA polymerase sigma-70 factor	NA
UHGV-0178754_26	eggNOG-mapper	397290.C810_00415	NA	NA
UHGV-0178754_28	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0178754_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178754_29	PHROG	phrog_25754	NA	unknown function
UHGV-0178754_29	eggNOG-mapper	1235792.C808_00074	NA	NA
UHGV-0178754_29	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0178754_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0178754_30	PHROG	phrog_15982	NA	unknown function
UHGV-0178754_30	UniRef90	UniRef90_N9XAA8	ParB domain-containing protein	NA
UHGV-0178754_30	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-0178754_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178754_30	Pfam	PF12961	NA	DUF3850
UHGV-0178754_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178754_30	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0178754_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0178754_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178754_31	UniRef90	UniRef90_N9XAL6	AAA_31 domain-containing protein	NA
UHGV-0178754_31	eggNOG-mapper	411470.RUMGNA_02050	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0178754_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-0178754_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178754_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0178754_32	PHROG	phrog_824	NA	unknown function
UHGV-0178754_32	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-0178754_32	eggNOG-mapper	397290.C810_00407	VRR_NUC	NA
UHGV-0178754_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0178754_32	Structural annotation	PF08774	NA	NA
UHGV-0178754_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178754_33	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0178754_33	Structural annotation	PF21578	NA	NA
UHGV-0178754_35	PHROG	phrog_26861	NA	unknown function
UHGV-0178754_35	UniRef90	UniRef90_C9LCQ5	Single-strand binding family protein	NA
UHGV-0178754_35	eggNOG-mapper	411470.RUMGNA_02043	NA	NA
UHGV-0178754_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178754_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178754_37	Structural annotation	PF21662, NF038384, TIGR03090	NA	NA
UHGV-0178754_39	PHROG	phrog_20014	NA	unknown function
UHGV-0178754_39	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0178754_40	PHROG	phrog_6058	NA	unknown function
UHGV-0178754_40	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-0178754_40	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0178754_40	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0178754_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0178754_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178754_43	UniRef90	UniRef90_A0A7C9H8R9	Helix-turn-helix domain-containing protein	NA
UHGV-0178754_43	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178754_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178754_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178754_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178754_44	eggNOG-mapper	411470.RUMGNA_02091	NA	NA
UHGV-0178754_46	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0178754_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178754_46	UniRef90	UniRef90_A0A7C9H3W9	Helix-turn-helix domain-containing protein	NA
UHGV-0178754_46	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178754_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178754_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178754_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0178754_47	KOfam	K14059	int; integrase	NA
UHGV-0178754_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0178754_47	UniRef90	UniRef90_A0A7C9H3C8	Tyrosine-type recombinase/integrase	NA
UHGV-0178754_47	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0178754_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178754_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178754_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA