UHGV-0178766

Genome information

Genome length 30,090 bps

CDS count 58

Completeness 67.00% (medium-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178766
vOTU ID	vOTU-022523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585996
BioSample	SAMN09781745
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.1
Jumbo phage	No

Genome content
Genome length	30,090 bps
GC content	32.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	82.67%
Average CDS length	431.85 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178766_1	KOfam	K14059	int; integrase	NA
UHGV-0178766_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0178766_1	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0178766_1	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0178766_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178766_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178766_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0178766_2	KOfam	K07172	mazE, chpAI; antitoxin MazE	NA
UHGV-0178766_2	PHROG	phrog_4324	NA	unknown function
UHGV-0178766_2	UniRef90	UniRef90_A0A6N7V4Q9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0178766_2	eggNOG-mapper	1122173.AXVL01000008_gene1112	PFAM SpoVT AbrB	NA
UHGV-0178766_2	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0178766_2	COG	COG2336	Antitoxin component MazE of the MazEF toxin-antitoxin module	NA
UHGV-0178766_2	Structural annotation	PF04014, MF_01193, NF008463, COG2336	NA	NA
UHGV-0178766_3	KOfam	K18841	chpB, chpBK; mRNA interferase ChpB [EC:3.1.-.-]	NA
UHGV-0178766_3	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0178766_3	UniRef90	UniRef90_A0A6N7VH90	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0178766_3	eggNOG-mapper	457405.FSDG_01637	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0178766_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0178766_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0178766_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0178766_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0178766_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0178766_4	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-0178766_4	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178766_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0178766_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178766_4	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0178766_6	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-0178766_6	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0178766_6	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0178766_9	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0178766_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0178766_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0178766_12	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0178766_12	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0178766_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178766_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0178766_12	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0178766_15	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178766_15	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0178766_15	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0178766_15	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0178766_15	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0178766_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178766_15	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0178766_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178766_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178766_16	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0178766_16	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0178766_16	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0178766_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178766_16	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0178766_19	Structural annotation	PF11184	NA	NA
UHGV-0178766_20	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0178766_20	UniRef90	UniRef90_UPI001D0A0924	dUTP diphosphatase	NA
UHGV-0178766_20	eggNOG-mapper	218284.CCDN010000001_gene545	dUTPase	NA
UHGV-0178766_20	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0178766_20	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0178766_20	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0178766_21	PHROG	phrog_4601	NA	unknown function
UHGV-0178766_21	Structural annotation	PF17888	NA	NA
UHGV-0178766_25	Structural annotation	PF17399	NA	NA
UHGV-0178766_26	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0178766_30	Structural annotation	PF11061	NA	NA
UHGV-0178766_34	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0178766_34	Pfam	PF07374	NA	DUF1492
UHGV-0178766_34	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0178766_36	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0178766_37	PHROG	phrog_2316	NA	unknown function
UHGV-0178766_37	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0178766_37	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0178766_37	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0178766_38	PHROG	phrog_4525	NA	unknown function
UHGV-0178766_46	eggNOG-mapper	502558.EGYY_11910	NA	NA
UHGV-0178766_47	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178766_47	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0178766_47	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0178766_47	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178766_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178766_48	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0178766_48	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0178766_48	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0178766_48	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178766_48	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0178766_48	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0178766_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178766_49	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0178766_49	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0178766_49	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178766_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178766_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178766_49	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0178766_50	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178766_50	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0178766_50	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0178766_50	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178766_50	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178766_50	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178766_51	KOfam	K06904	NA	NA
UHGV-0178766_51	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178766_51	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0178766_51	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0178766_51	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178766_51	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178766_51	COG	COG3740	Phage head maturation protease	NA
UHGV-0178766_51	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178766_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178766_52	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0178766_52	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0178766_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178766_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178766_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178766_52	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178766_53	PHROG	phrog_5223	neck protein	connector
UHGV-0178766_53	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0178766_53	Structural annotation	TIGR01560	NA	NA
UHGV-0178766_54	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0178766_54	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0178766_54	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0178766_54	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0178766_54	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0178766_54	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178766_55	eggNOG-mapper	1145276.T479_19945	NA	NA
UHGV-0178766_55	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0178766_56	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0178766_56	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0178766_56	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178766_56	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178766_57	PHROG	phrog_88	major tail protein	tail
UHGV-0178766_57	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0178766_57	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0178766_57	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178766_57	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0178766_58	Structural annotation	PF11836	NA	NA