UHGV-0178794

Genome information

Genome length 36,251 bps

CDS count 43

Completeness 89.28% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178794
vOTU ID	vOTU-029038
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581329
BioSample	SAMN09781751
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.63
Jumbo phage	No

Genome content
Genome length	36,251 bps
GC content	37.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.37%
Average CDS length	773.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178794_1	PHROG	phrog_3335	NA	unknown function
UHGV-0178794_2	PHROG	phrog_3095	tail protein with endopeptidase activity	other
UHGV-0178794_2	UniRef90	UniRef90_UPI001F068DB0	phage tail protein	NA
UHGV-0178794_2	eggNOG-mapper	1123302.KB904182_gene60	Prophage endopeptidase tail	NA
UHGV-0178794_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178794_2	COG	COG1511	NA	NA
UHGV-0178794_2	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0178794_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178794_3	UniRef90	UniRef90_A0A447UCS7	NA	NA
UHGV-0178794_3	eggNOG-mapper	1123302.KB904182_gene61	Phage tail protein	NA
UHGV-0178794_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0178794_3	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0178794_4	PHROG	phrog_1204	tail protein	tail
UHGV-0178794_4	UniRef90	UniRef90_A0A6F9N2T9	Phage tail tape measure protein	NA
UHGV-0178794_4	eggNOG-mapper	1158614.I592_02260	nuclear chromosome segregation	NA
UHGV-0178794_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178794_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178794_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178794_4	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0178794_5	PHROG	phrog_2567	NA	unknown function
UHGV-0178794_5	UniRef90	UniRef90_A0A447UCR7	NA	NA
UHGV-0178794_6	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0178794_6	UniRef90	UniRef90_A0A3R9KJE8	NA	NA
UHGV-0178794_6	eggNOG-mapper	1123302.KB904182_gene63	Phage tail assembly chaperone protein, TAC	NA
UHGV-0178794_6	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0178794_6	Structural annotation	PF12363	NA	NA
UHGV-0178794_7	PHROG	phrog_238	major tail protein	tail
UHGV-0178794_7	UniRef90	UniRef90_A0A3E2SGX7	Phage major tail protein, TP901-1 family	NA
UHGV-0178794_7	eggNOG-mapper	1123302.KB904182_gene64	domain, Protein	NA
UHGV-0178794_7	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0178794_7	COG	COG5492	NA	NA
UHGV-0178794_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178794_8	PHROG	phrog_176	tail terminator	connector
UHGV-0178794_8	UniRef90	UniRef90_J7MAY0	NA	NA
UHGV-0178794_8	eggNOG-mapper	1123302.KB904182_gene65	NA	NA
UHGV-0178794_8	Structural annotation	PF06141, MF_00281, COG0016	NA	NA
UHGV-0178794_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178794_9	UniRef90	UniRef90_A0A3S4I184	NA	NA
UHGV-0178794_9	eggNOG-mapper	1123302.KB904182_gene66	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0178794_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178794_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178794_9	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0178794_10	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0178794_10	UniRef90	UniRef90_A0A4V0EDU8	NA	NA
UHGV-0178794_10	eggNOG-mapper	1314.HKU360_01485	NA	NA
UHGV-0178794_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178794_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0178794_11	UniRef90	UniRef90_UPI0012B51F50	phage head-tail connector protein	NA
UHGV-0178794_11	eggNOG-mapper	1314.HKU360_01486	Phage gp6-like head-tail connector protein	NA
UHGV-0178794_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178794_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0178794_12	UniRef90	UniRef90_A0A2I1YI87	Phage capsid protein	NA
UHGV-0178794_12	eggNOG-mapper	1123318.KB904586_gene505	NA	NA
UHGV-0178794_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0178794_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0178794_13	UniRef90	UniRef90_A0A4D6A3V9	Capsid and scaffold protein	NA
UHGV-0178794_13	eggNOG-mapper	1123318.KB904586_gene506	NA	NA
UHGV-0178794_13	Pfam	PF14265	NA	DUF4355
UHGV-0178794_13	Structural annotation	PF14265	NA	NA
UHGV-0178794_14	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0178794_14	UniRef90	UniRef90_A0A6F9N336	Phage head morphogenesis protein	NA
UHGV-0178794_14	eggNOG-mapper	1123302.KB904182_gene74	Phage Mu protein F like protein	NA
UHGV-0178794_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178794_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0178794_14	COG	COG2369	NA	NA
UHGV-0178794_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0178794_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178794_15	UniRef90	UniRef90_A0A6F9N2U9	Phage portal protein	NA
UHGV-0178794_15	eggNOG-mapper	1123318.KB904586_gene510	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178794_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178794_15	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0178794_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0178794_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178794_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178794_16	UniRef90	UniRef90_A0A4D6A2Q5	Terminase, large subunit	NA
UHGV-0178794_16	eggNOG-mapper	1158614.I592_02273	Terminase RNAseH like domain	NA
UHGV-0178794_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178794_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178794_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178794_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178794_16	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0178794_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178794_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178794_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0178794_17	UniRef90	UniRef90_UPI001BDADB8D	terminase small subunit	NA
UHGV-0178794_17	eggNOG-mapper	1069533.Sinf_0782	DNA packaging	NA
UHGV-0178794_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178794_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178794_17	Structural annotation	PF03592	NA	NA
UHGV-0178794_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178794_18	UniRef90	UniRef90_A0A2I1YI57	Transcriptional regulator	NA
UHGV-0178794_18	eggNOG-mapper	1069533.Sinf_0781	Transcriptional regulator, RinA family	NA
UHGV-0178794_18	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0178794_18	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0178794_19	PHROG	phrog_30456	NA	unknown function
UHGV-0178794_20	PHROG	phrog_1489	NA	unknown function
UHGV-0178794_20	UniRef90	UniRef90_A0A447UCQ8	Phage associated protein	NA
UHGV-0178794_21	PHROG	phrog_3745	NA	unknown function
UHGV-0178794_21	UniRef90	UniRef90_A0A447UCM2	Phage associated protein	NA
UHGV-0178794_23	Structural annotation	PF20432, MF_00535, NF040507, COG1476	NA	NA
UHGV-0178794_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178794_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178794_24	UniRef90	UniRef90_A0A3S4IZ61	Phage associated protein	NA
UHGV-0178794_24	eggNOG-mapper	1123304.AQYA01000037_gene201	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0178794_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0178794_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178794_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0178794_25	PHROG	phrog_2625	NA	unknown function
UHGV-0178794_27	PHROG	phrog_121	NA	unknown function
UHGV-0178794_27	UniRef90	UniRef90_UPI001F06C572	NA	NA
UHGV-0178794_27	eggNOG-mapper	1123315.AUIP01000003_gene225	NA	NA
UHGV-0178794_27	Pfam	PF07852	NA	DUF1642
UHGV-0178794_27	Structural annotation	PF07852	NA	NA
UHGV-0178794_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0178794_28	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0178794_28	UniRef90	UniRef90_A0A3E2SGZ1	DNA primase	NA
UHGV-0178794_28	eggNOG-mapper	1123302.KB904182_gene86	Primase C terminal 2 (PriCT-2)	NA
UHGV-0178794_28	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0178794_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0178794_28	COG	COG3598	RecA-family ATPase	NA
UHGV-0178794_28	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0178794_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0178794_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178794_29	UniRef90	UniRef90_A0A447UCK4	DEAD/DEAH box helicase	NA
UHGV-0178794_29	eggNOG-mapper	1123315.AUIP01000003_gene216	helicase	NA
UHGV-0178794_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0178794_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0178794_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0178794_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0178794_29	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0178794_30	PHROG	phrog_2698	NA	unknown function
UHGV-0178794_30	UniRef90	UniRef90_A0A3S4JK96	NA	NA
UHGV-0178794_30	eggNOG-mapper	1123302.KB904182_gene88	NA	NA
UHGV-0178794_30	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0178794_31	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178794_31	UniRef90	UniRef90_A0A3S4I583	NA	NA
UHGV-0178794_31	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0178794_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178794_31	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0178794_32	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0178794_32	PHROG	phrog_1499	NA	unknown function
UHGV-0178794_32	UniRef90	UniRef90_A0A4D6A7Z1	AAA_23 domain-containing protein	NA
UHGV-0178794_32	eggNOG-mapper	1123315.AUIP01000003_gene213	AAA domain	NA
UHGV-0178794_32	Pfam	PF13476	AAA domain	AAA_23
UHGV-0178794_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178794_32	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0178794_33	PHROG	phrog_5666	NA	unknown function
UHGV-0178794_33	UniRef90	UniRef90_A0A3S5DNE5	NA	NA
UHGV-0178794_33	eggNOG-mapper	764299.STRIC_0083	Transcriptional	NA
UHGV-0178794_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178794_34	PHROG	phrog_904	excisionase	integration and excision
UHGV-0178794_34	UniRef90	UniRef90_A0A2I1YI68	Excisionase	NA
UHGV-0178794_34	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-0178794_34	Structural annotation	PF20063	NA	NA
UHGV-0178794_35	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178794_35	UniRef90	UniRef90_A0A2Z4PHH7	DNA-binding protein	NA
UHGV-0178794_35	eggNOG-mapper	120574.Q94M74_9CAUD	NA	NA
UHGV-0178794_35	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0178794_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0178794_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178794_36	UniRef90	UniRef90_UPI0005E11692	helix-turn-helix domain-containing protein	NA
UHGV-0178794_36	eggNOG-mapper	157924.Q7Y4M0_9CAUD	sequence-specific DNA binding	NA
UHGV-0178794_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178794_36	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0178794_37	PHROG	phrog_10226	NA	unknown function
UHGV-0178794_37	eggNOG-mapper	365659.smi_1368	NA	NA
UHGV-0178794_37	Structural annotation	PF01878, COG4127	NA	NA
UHGV-0178794_38	PHROG	phrog_87	metallo-protease	other
UHGV-0178794_38	UniRef90	UniRef90_A0A1C3SRC4	Peptidase_M78 domain-containing protein	NA
UHGV-0178794_38	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0178794_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0178794_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0178794_38	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0178794_39	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0178794_39	UniRef90	UniRef90_A0A3E2SGZ3	NA	NA
UHGV-0178794_39	eggNOG-mapper	1423724.BAMM01000020_gene1794	NA	NA
UHGV-0178794_39	Pfam	PF12978	NA	DUF3862
UHGV-0178794_39	Structural annotation	PF12978	NA	NA
UHGV-0178794_40	UniRef90	UniRef90_A0A6F9N1F5	Colicin immunity protein	NA
UHGV-0178794_43	KOfam	K14059	int; integrase	NA
UHGV-0178794_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0178794_43	UniRef90	UniRef90_A0A2G3NVW9	Site-specific integrase	NA
UHGV-0178794_43	eggNOG-mapper	646413.C5IUL7_9CAUD	Phage integrase family	NA
UHGV-0178794_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0178794_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178794_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA