UHGV-0178795

Genome information

Genome length 42,751 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178795
vOTU ID	vOTU-005416
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581328
BioSample	SAMN09781751
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.13
Jumbo phage	No

Genome content
Genome length	42,751 bps
GC content	45.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.84%
Average CDS length	694.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178795_1	UniRef90	UniRef90_A0A1Q6PTU2	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0178795_1	eggNOG-mapper	1163671.JAGI01000002_gene2855	NA	NA
UHGV-0178795_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178795_1	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0178795_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178795_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178795_2	UniRef90	UniRef90_A0A3E3DX48	Helix-turn-helix domain-containing protein	NA
UHGV-0178795_2	eggNOG-mapper	642492.Clole_2801	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178795_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178795_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178795_2	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178795_3	KOfam	K14059	int; integrase	NA
UHGV-0178795_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0178795_3	UniRef90	UniRef90_A0A7Y9B158	Site-specific integrase	NA
UHGV-0178795_3	eggNOG-mapper	936375.HMPREF1152_0651	Belongs to the 'phage' integrase family	NA
UHGV-0178795_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0178795_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178795_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178795_3	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0178795_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178795_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178795_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178795_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178795_7	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0178795_9	PHROG	phrog_21718	NA	unknown function
UHGV-0178795_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0178795_10	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0178795_11	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0178795_11	PHROG	phrog_22978	NA	unknown function
UHGV-0178795_11	eggNOG-mapper	748449.Halha_1635	Peptidase family M23	NA
UHGV-0178795_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0178795_11	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0178795_12	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0178795_13	eggNOG-mapper	411469.EUBHAL_00974	CHAP domain	NA
UHGV-0178795_13	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0178795_13	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0178795_14	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178795_14	PHROG	phrog_435	endolysin	lysis
UHGV-0178795_14	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178795_14	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178795_14	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178795_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178795_14	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0178795_15	PHROG	phrog_1129	holin	lysis
UHGV-0178795_15	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0178795_15	eggNOG-mapper	1158601.I585_01143	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0178795_15	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178795_15	Structural annotation	PF06946	NA	NA
UHGV-0178795_16	eggNOG-mapper	657322.FPR_21890	NA	NA
UHGV-0178795_17	PHROG	phrog_25468	NA	unknown function
UHGV-0178795_17	eggNOG-mapper	5722.XP_001311412.1	NA	NA
UHGV-0178795_19	PHROG	phrog_6465	tail protein	tail
UHGV-0178795_19	UniRef90	UniRef90_A2GKJ6	Phage associate minor structural protein, putative	NA
UHGV-0178795_19	eggNOG-mapper	1410624.JNKK01000017_gene1989	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0178795_19	COG	COG4675	Phage tail collar domain	NA
UHGV-0178795_19	Structural annotation	COG4675	NA	NA
UHGV-0178795_20	PHROG	phrog_24103	NA	unknown function
UHGV-0178795_20	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0178795_22	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0178795_22	UniRef90	UniRef90_A0A348ZD54	Dockerin domain-containing protein	NA
UHGV-0178795_22	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0178795_22	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0178795_23	PHROG	phrog_12105	NA	unknown function
UHGV-0178795_23	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0178795_24	PHROG	phrog_15239	NA	unknown function
UHGV-0178795_25	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0178795_25	UniRef90	UniRef90_UPI001CF8B373	N4-gp56 family major capsid protein	NA
UHGV-0178795_25	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0178795_25	Pfam	PF13252	NA	DUF4043
UHGV-0178795_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0178795_25	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178795_26	PHROG	phrog_13908	NA	unknown function
UHGV-0178795_26	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0178795_26	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0178795_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-0178795_28	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0178795_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0178795_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178795_29	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0178795_29	UniRef90	UniRef90_UPI0010311CEE	phage terminase large subunit	NA
UHGV-0178795_29	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0178795_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178795_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178795_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178795_30	Structural annotation	NF040601	NA	NA
UHGV-0178795_31	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0178795_31	UniRef90	UniRef90_UPI0018991BC6	antirestriction protein ArdA	NA
UHGV-0178795_31	eggNOG-mapper	1231377.C426_0820	Antirestriction protein (ArdA)	NA
UHGV-0178795_31	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0178795_31	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0178795_31	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0178795_31	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0178795_32	Structural annotation	PF07878, NF010256, COG4877	NA	NA
UHGV-0178795_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178795_35	UniRef90	UniRef90_A0A846K3D1	MazG domain-containing protein	NA
UHGV-0178795_35	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0178795_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178795_38	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0178795_38	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0178795_38	Pfam	PF06356	NA	DUF1064
UHGV-0178795_38	Structural annotation	PF06356	NA	NA
UHGV-0178795_39	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0178795_39	UniRef90	UniRef90_UPI0012923FF4	helix-turn-helix domain-containing protein	NA
UHGV-0178795_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0178795_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178795_39	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0178795_40	PHROG	phrog_474	phosphofructokinase	other
UHGV-0178795_40	UniRef90	UniRef90_UPI001D174B3C	NA	NA
UHGV-0178795_40	eggNOG-mapper	1111121.HMPREF1247_0807	NA	NA
UHGV-0178795_40	Pfam	PF19905	NA	DUF6378
UHGV-0178795_40	Structural annotation	PF19905	NA	NA
UHGV-0178795_41	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0178795_41	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0178795_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178795_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178795_44	UniRef90	UniRef90_A0A6N7X559	AAA family ATPase	NA
UHGV-0178795_44	eggNOG-mapper	1256908.HMPREF0373_01003	NA	NA
UHGV-0178795_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0178795_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178795_44	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0178795_45	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178795_45	UniRef90	UniRef90_A0A843H4R1	Helix-turn-helix domain-containing protein	NA
UHGV-0178795_45	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0178795_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178795_45	Structural annotation	PF05584, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0178795_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178795_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178795_46	UniRef90	UniRef90_A0A1C5T9Y0	Single-stranded DNA-binding protein	NA
UHGV-0178795_46	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178795_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178795_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178795_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178795_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178795_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178795_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178795_47	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0178795_47	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178795_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0178795_48	PHROG	phrog_7566	NA	unknown function
UHGV-0178795_48	UniRef90	UniRef90_A0A3R6Y3R0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0178795_48	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0178795_49	PHROG	phrog_11717	NA	unknown function
UHGV-0178795_49	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0178795_49	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0178795_53	Structural annotation	PF04347	NA	NA
UHGV-0178795_55	UniRef90	UniRef90_A0A1G7ADU2	DNA binding domain-containing protein, excisionase family	NA
UHGV-0178795_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0178795_55	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0178795_55	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0178795_55	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA