UHGV-0178799

Genome information

Genome length 50,896 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178799
vOTU ID	vOTU-076854
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582848
BioSample	SAMN09781737
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.13
Jumbo phage	No

Genome content
Genome length	50,896 bps
GC content	43.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.07%
Average CDS length	744.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178799_1	UniRef90	UniRef90_A0A1H4D9E1	Transcriptional regulator, AbiEi antitoxin, Type IV TA system	NA
UHGV-0178799_1	eggNOG-mapper	97139.C824_01995	NA	NA
UHGV-0178799_1	PADLOC	AbiEi_WP_087193970.1	AbiEi	Abi
UHGV-0178799_2	eggNOG-mapper	97139.C824_01996	Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA
UHGV-0178799_2	PADLOC	AbiEii_WP_101478573.1	AbiEii	Abi
UHGV-0178799_2	COG	COG2253	Predicted nucleotidyltransferase component of viral defense system	NA
UHGV-0178799_3	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0178799_3	UniRef90	UniRef90_A0A3R6T4L0	SGNH_hydro domain-containing protein	NA
UHGV-0178799_3	eggNOG-mapper	246199.CUS_6834	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0178799_3	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0178799_3	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0178799_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178799_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178799_4	UniRef90	UniRef90_A0A174H2S7	HTH-type transcriptional regulator immR	NA
UHGV-0178799_4	eggNOG-mapper	411474.COPEUT_00089	sequence-specific DNA binding	NA
UHGV-0178799_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178799_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178799_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178799_6	eggNOG-mapper	411474.COPEUT_00087	NA	NA
UHGV-0178799_7	UniRef90	UniRef90_A0A6N9K882	Fibronectin type-III domain-containing protein	NA
UHGV-0178799_7	eggNOG-mapper	411489.CLOL250_01121	COG3209 Rhs family protein	NA
UHGV-0178799_7	Pfam	PF14478	NA	DUF4430
UHGV-0178799_7	COG	COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	NA
UHGV-0178799_8	eggNOG-mapper	411489.CLOL250_01120	NA	NA
UHGV-0178799_8	Pfam	PF18780	Homing endonuclease associated repeat	HNH_repeat
UHGV-0178799_9	KOfam	K14059	int; integrase	NA
UHGV-0178799_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0178799_9	UniRef90	UniRef90_A0A3R6PIV6	Site-specific integrase	NA
UHGV-0178799_9	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0178799_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178799_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178799_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0178799_10	UniRef90	UniRef90_UPI00189DFA3E	SAP domain-containing protein	NA
UHGV-0178799_10	eggNOG-mapper	1282664.H354_06896	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0178799_10	Pfam	PF02037	SAP domain	SAP
UHGV-0178799_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0178799_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0178799_11	UniRef90	UniRef90_A0A822LS29	HTH cro/C1-type domain-containing protein	NA
UHGV-0178799_11	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0178799_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178799_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0178799_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178799_11	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0178799_12	UniRef90	UniRef90_UPI0015EB610A	NA	NA
UHGV-0178799_12	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0178799_12	Pfam	PF05339	NA	DUF739
UHGV-0178799_12	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0178799_12	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0178799_16	PHROG	phrog_3240	NA	unknown function
UHGV-0178799_16	eggNOG-mapper	1158604.I591_00517	NA	NA
UHGV-0178799_20	UniRef90	UniRef90_A0A173W999	Helix-turn-helix domain	NA
UHGV-0178799_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178799_20	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0178799_21	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0178799_21	Structural annotation	PF20063	NA	NA
UHGV-0178799_23	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178799_23	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-0178799_23	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0178799_23	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0178799_23	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0178799_23	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0178799_23	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178799_24	PHROG	phrog_674	NA	unknown function
UHGV-0178799_24	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0178799_24	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0178799_24	Pfam	PF07083	NA	DUF1351
UHGV-0178799_24	Structural annotation	PF07083	NA	NA
UHGV-0178799_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0178799_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178799_27	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0178799_27	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0178799_27	Pfam	PF03837	RecT family	RecT
UHGV-0178799_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0178799_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0178799_27	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0178799_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178799_28	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0178799_28	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0178799_28	Pfam	PF06356	NA	DUF1064
UHGV-0178799_28	Structural annotation	PF06356	NA	NA
UHGV-0178799_29	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178799_29	UniRef90	UniRef90_A0A3R6T4J6	Phage_rep_org_N domain-containing protein	NA
UHGV-0178799_29	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0178799_29	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0178799_29	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0178799_29	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0178799_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0178799_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178799_30	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0178799_30	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0178799_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0178799_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178799_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178799_30	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0178799_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178799_31	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0178799_31	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0178799_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178799_31	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0178799_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178799_32	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0178799_32	UniRef90	UniRef90_UPI001C00DDF6	phage antirepressor KilAC domain-containing protein	NA
UHGV-0178799_32	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0178799_32	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0178799_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178799_32	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0178799_32	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0178799_33	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0178799_37	PHROG	phrog_874	NA	unknown function
UHGV-0178799_37	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0178799_37	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0178799_37	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0178799_38	PHROG	phrog_8684	NA	unknown function
UHGV-0178799_38	UniRef90	UniRef90_A0A3A6J9I1	YopX domain-containing protein	NA
UHGV-0178799_38	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0178799_38	Pfam	PF09643	YopX protein	YopX
UHGV-0178799_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0178799_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0178799_40	PHROG	phrog_17690	NA	unknown function
UHGV-0178799_40	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0178799_40	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0178799_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178799_41	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0178799_41	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0178799_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178799_41	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0178799_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178799_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0178799_43	UniRef90	UniRef90_A0A3R6PDT1	Terminase small subunit	NA
UHGV-0178799_43	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0178799_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178799_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178799_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0178799_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178799_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178799_44	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0178799_44	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0178799_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178799_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178799_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178799_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178799_44	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178799_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178799_45	UniRef90	UniRef90_A0A173W966	Phage portal protein, SPP1 family	NA
UHGV-0178799_45	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0178799_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178799_45	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0178799_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178799_46	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0178799_46	UniRef90	UniRef90_A0A6N9K285	Phage_Mu_F domain-containing protein	NA
UHGV-0178799_46	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0178799_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178799_46	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0178799_46	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0178799_46	COG	COG2369	NA	NA
UHGV-0178799_46	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0178799_47	PHROG	phrog_872	NA	unknown function
UHGV-0178799_47	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-0178799_47	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0178799_47	Pfam	PF11195	NA	DUF2829
UHGV-0178799_47	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0178799_47	Structural annotation	PF11195	NA	NA
UHGV-0178799_48	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0178799_48	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0178799_48	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0178799_48	Pfam	PF14265	NA	DUF4355
UHGV-0178799_49	PHROG	phrog_267	major head protein	head and packaging
UHGV-0178799_49	UniRef90	UniRef90_A0A173W8U9	p22 coat protein-gene protein 5	NA
UHGV-0178799_49	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0178799_49	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178799_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178799_51	Structural annotation	PF05135	NA	NA
UHGV-0178799_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178799_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178799_53	UniRef90	UniRef90_A0A173W5Z4	Phage protein, HK97 gp10 family	NA
UHGV-0178799_53	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0178799_53	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178799_53	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178799_53	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178799_54	Structural annotation	PF05657	NA	NA
UHGV-0178799_55	PHROG	phrog_158	major tail protein	tail
UHGV-0178799_55	UniRef90	UniRef90_A0A173W733	Phage tail protein	NA
UHGV-0178799_55	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0178799_55	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0178799_55	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0178799_56	Structural annotation	PF11836	NA	NA
UHGV-0178799_58	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0178799_58	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178799_58	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-0178799_58	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0178799_58	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0178799_59	PHROG	phrog_1194	NA	unknown function
UHGV-0178799_59	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0178799_59	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0178799_59	Pfam	PF20458	NA	DUF6711
UHGV-0178799_59	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178799_60	PHROG	phrog_6616	tail protein	tail
UHGV-0178799_60	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0178799_60	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0178799_60	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0178799_60	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0178799_61	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0178799_61	PHROG	phrog_15074	NA	unknown function
UHGV-0178799_61	UniRef90	UniRef90_A0A173W873	Collagen triple helix repeat (20 copies)	NA
UHGV-0178799_61	eggNOG-mapper	471855.Shel_15430	NA	NA
UHGV-0178799_61	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178799_61	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0178799_62	eggNOG-mapper	1437603.BMON_1127	NA	NA
UHGV-0178799_63	PHROG	phrog_199	holin	lysis
UHGV-0178799_63	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-0178799_63	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0178799_63	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178799_63	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178799_63	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178799_63	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178799_64	KOfam	K07273	acm; lysozyme	NA
UHGV-0178799_64	PHROG	phrog_291	endolysin	lysis
UHGV-0178799_64	UniRef90	UniRef90_A0A1Q6MG54	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0178799_64	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0178799_64	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178799_64	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0178799_64	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0178799_64	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA