UHGV-0178801

Genome information

Genome length 39,085 bps

CDS count 63

Completeness 99.26% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178801
vOTU ID	vOTU-010968
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582847
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.53
Jumbo phage	No

Genome content
Genome length	39,085 bps
GC content	60.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.31%
Average CDS length	563.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178801_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0178801_1	UniRef90	UniRef90_UPI001F1C7CBA	phage terminase small subunit P27 family	NA
UHGV-0178801_1	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0178801_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178801_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0178801_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0178801_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178801_3	UniRef90	UniRef90_A0A096DGH7	Phage terminase, large subunit	NA
UHGV-0178801_3	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0178801_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178801_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178801_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178801_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0178801_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178801_10	UniRef90	UniRef90_UPI001AE072D2	phage portal protein	NA
UHGV-0178801_10	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0178801_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178801_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178801_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178801_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0178801_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0178801_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0178801_12	UniRef90	UniRef90_UPI001ADF09D6	Clp protease ClpP	NA
UHGV-0178801_12	eggNOG-mapper	12417.Q9T1F7_9CAUD	Clp protease	NA
UHGV-0178801_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0178801_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178801_14	UniRef90	UniRef90_UPI001AE094BA	phage major capsid protein	NA
UHGV-0178801_14	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0178801_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178801_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178801_14	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178801_17	Structural annotation	PF11836	NA	NA
UHGV-0178801_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0178801_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178801_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0178801_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178801_20	UniRef90	UniRef90_UPI0009B9A4FA	HK97 gp10 family phage protein	NA
UHGV-0178801_20	eggNOG-mapper	324057.Pjdr2_1547	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0178801_21	Structural annotation	PF12691	NA	NA
UHGV-0178801_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178801_22	eggNOG-mapper	1262449.CP6013_1049	tail tape measure protein	NA
UHGV-0178801_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0178801_23	PHROG	phrog_1194	NA	unknown function
UHGV-0178801_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178801_24	PHROG	phrog_6616	tail protein	tail
UHGV-0178801_24	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0178801_27	PHROG	phrog_38044	NA	unknown function
UHGV-0178801_27	NCBIFam	TIGR01965.1	VCBS domain-containing protein	NA
UHGV-0178801_27	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0178801_28	Structural annotation	PF03425, NF038128, COG5156	NA	NA
UHGV-0178801_29	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0178801_29	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0178801_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178801_29	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0178801_31	PHROG	phrog_1382	NA	unknown function
UHGV-0178801_31	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0178801_31	Structural annotation	NF040910	NA	NA
UHGV-0178801_32	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0178801_32	PHROG	phrog_2649	endolysin	lysis
UHGV-0178801_32	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0178801_32	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0178801_32	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178801_32	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0178801_32	COG	COG3108	NA	NA
UHGV-0178801_32	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0178801_33	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0178801_34	PHROG	phrog_881	holin	lysis
UHGV-0178801_34	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0178801_34	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0178801_34	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0178801_34	Structural annotation	PF16938	NA	NA
UHGV-0178801_35	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0178801_37	PHROG	phrog_16490	NA	unknown function
UHGV-0178801_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178801_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178801_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0178801_40	UniRef90	UniRef90_UPI0014129D5F	recombinase family protein	NA
UHGV-0178801_40	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0178801_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178801_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178801_40	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178801_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178801_40	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0178801_42	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0178801_42	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0178801_42	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0178801_43	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-0178801_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0178801_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178801_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178801_46	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0178801_48	PHROG	phrog_37629	NA	unknown function
UHGV-0178801_48	eggNOG-mapper	397290.C810_00442	NA	NA
UHGV-0178801_49	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-0178801_49	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178801_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0178801_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178801_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178801_54	UniRef90	UniRef90_A0A316MAS4	Helix-turn-helix domain-containing protein	NA
UHGV-0178801_54	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0178801_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178801_54	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0178801_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178801_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178801_55	UniRef90	UniRef90_R5ENX5	DNA helicase	NA
UHGV-0178801_55	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0178801_55	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178801_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178801_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178801_55	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178801_57	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0178801_57	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178801_57	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0178801_57	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0178801_57	Pfam	PF13614	AAA domain	AAA_31
UHGV-0178801_57	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178801_57	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0178801_58	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0178801_58	PHROG	phrog_27290	NA	unknown function
UHGV-0178801_58	UniRef90	UniRef90_R5EBB0	ParB domain-containing protein	NA
UHGV-0178801_58	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0178801_58	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178801_58	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178801_58	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0178801_61	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178801_61	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0178801_61	eggNOG-mapper	1203606.HMPREF1526_01330	NA	NA
UHGV-0178801_61	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0178801_62	UniRef90	UniRef90_A0A7X4ZJI5	Conjugal transfer protein	NA
UHGV-0178801_62	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0178801_62	Structural annotation	PF14205	NA	NA
UHGV-0178801_63	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178801_63	UniRef90	UniRef90_A0A096BC59	HNH domain-containing protein	NA
UHGV-0178801_63	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0178801_63	AcrCatalog	cluster_19695	NA	NA
UHGV-0178801_63	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178801_63	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178801_63	Structural annotation	PF01844, COG1403	NA	NA