UHGV-0178802

Genome information

Genome length 42,766 bps

CDS count 79

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178802
vOTU ID	vOTU-046663
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582846
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.19
Jumbo phage	No

Genome content
Genome length	42,766 bps
GC content	53.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	89.20%
Average CDS length	487.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178802_1	PHROG	phrog_27197	NA	unknown function
UHGV-0178802_1	Structural annotation	NF007410	NA	NA
UHGV-0178802_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178802_4	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0178802_4	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0178802_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178802_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0178802_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178802_5	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-0178802_5	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0178802_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178802_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178802_5	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0178802_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178802_6	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0178802_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178802_6	Structural annotation	PF05772	NA	NA
UHGV-0178802_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178802_7	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178802_7	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0178802_7	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0178802_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178802_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178802_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178802_8	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0178802_8	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0178802_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178802_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178802_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178802_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178802_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178802_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178802_9	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0178802_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178802_9	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0178802_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178802_11	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178802_11	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178802_11	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0178802_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178802_11	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0178802_12	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178802_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178802_12	UniRef90	UniRef90_A0A2V2FKC4	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178802_12	eggNOG-mapper	641112.ACOK01000119_gene1505	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0178802_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178802_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178802_13	eggNOG-mapper	641112.ACOK01000119_gene1505	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0178802_13	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178802_17	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0178802_17	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0178802_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0178802_17	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0178802_17	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0178802_17	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0178802_18	PHROG	phrog_236	nucleotide kinase	other
UHGV-0178802_18	UniRef90	UniRef90_A0A845MY30	NA	NA
UHGV-0178802_18	eggNOG-mapper	1173749.S4TNV2_9CAUD	NA	NA
UHGV-0178802_18	Pfam	PF11753	NA	DUF3310
UHGV-0178802_18	Structural annotation	PF11753	NA	NA
UHGV-0178802_20	KOfam	K18960	gp49; recombination endonuclease VII	NA
UHGV-0178802_20	PHROG	phrog_2633	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0178802_20	UniRef90	UniRef90_UPI0013052D43	endonuclease VII domain-containing protein	NA
UHGV-0178802_20	eggNOG-mapper	1054968.G0X516_9CAUD	endonuclease activity	NA
UHGV-0178802_20	PADLOC	REase_II_00096	Type II restriction enzyme	RM
UHGV-0178802_20	Pfam	PF02945	Recombination endonuclease VII	Endonuclease_7
UHGV-0178802_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0178802_23	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0178802_23	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0178802_24	PHROG	phrog_774	NA	unknown function
UHGV-0178802_26	PHROG	phrog_25385	NA	unknown function
UHGV-0178802_26	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0178802_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178802_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178802_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0178802_31	PHROG	phrog_23592	NA	unknown function
UHGV-0178802_31	eggNOG-mapper	642492.Clole_2778	NA	NA
UHGV-0178802_31	Structural annotation	PF20829	NA	NA
UHGV-0178802_34	PHROG	phrog_13890	NA	unknown function
UHGV-0178802_34	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0178802_34	eggNOG-mapper	1378168.N510_00539	NA	NA
UHGV-0178802_34	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0178802_35	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178802_35	UniRef90	UniRef90_A0A417HAM3	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178802_35	eggNOG-mapper	358220.C380_09765	sulfate reduction	NA
UHGV-0178802_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178802_35	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0178802_36	eggNOG-mapper	446462.Amir_3266	NA	NA
UHGV-0178802_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178802_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178802_38	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0178802_38	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0178802_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178802_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178802_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178802_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178802_38	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178802_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178802_39	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0178802_39	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0178802_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178802_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178802_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178802_40	UniRef90	UniRef90_UPI0006C77A91	phage minor capsid protein	NA
UHGV-0178802_40	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0178802_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178802_40	COG	COG2369	NA	NA
UHGV-0178802_40	Structural annotation	PF06152	NA	NA
UHGV-0178802_41	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0178802_41	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0178802_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178802_42	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0178802_42	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0178802_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178802_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178802_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178802_42	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178802_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178802_43	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0178802_44	PHROG	phrog_3366	NA	unknown function
UHGV-0178802_44	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-0178802_44	Pfam	PF20536	NA	DUF6751
UHGV-0178802_44	Structural annotation	PF20536, COG5437	NA	NA
UHGV-0178802_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178802_45	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-0178802_45	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0178802_45	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178802_45	Structural annotation	PF11114	NA	NA
UHGV-0178802_46	PHROG	phrog_3266	tail completion	connector
UHGV-0178802_46	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0178802_46	Structural annotation	PF12691	NA	NA
UHGV-0178802_47	PHROG	phrog_3099	NA	unknown function
UHGV-0178802_47	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0178802_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178802_48	PHROG	phrog_11299	NA	unknown function
UHGV-0178802_48	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0178802_48	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0178802_48	Structural annotation	PF10666	NA	NA
UHGV-0178802_49	PHROG	phrog_706	NA	unknown function
UHGV-0178802_49	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-0178802_49	eggNOG-mapper	663278.Ethha_0489	Bacteriophage Gp15 protein	NA
UHGV-0178802_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178802_49	Structural annotation	PF06854	NA	NA
UHGV-0178802_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178802_50	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0178802_50	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0178802_50	COG	COG1511	NA	NA
UHGV-0178802_51	PHROG	phrog_1194	NA	unknown function
UHGV-0178802_51	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0178802_51	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178802_52	PHROG	phrog_32744	NA	unknown function
UHGV-0178802_52	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0178802_52	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0178802_53	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0178802_53	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-0178802_54	PHROG	phrog_24451	NA	unknown function
UHGV-0178802_54	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0178802_55	PHROG	phrog_1382	NA	unknown function
UHGV-0178802_55	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0178802_57	PHROG	phrog_199	holin	lysis
UHGV-0178802_57	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0178802_57	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0178802_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178802_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178802_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178802_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178802_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178802_58	PHROG	phrog_670	endolysin	lysis
UHGV-0178802_58	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178802_58	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0178802_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178802_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0178802_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0178802_59	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0178802_59	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0178802_59	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0178802_61	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0178802_62	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0178802_63	PHROG	phrog_16490	NA	unknown function
UHGV-0178802_63	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0178802_64	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0178802_65	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0178802_66	KOfam	K14059	int; integrase	NA
UHGV-0178802_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0178802_66	UniRef90	UniRef90_A0A845MUP0	Tyrosine-type recombinase/integrase	NA
UHGV-0178802_66	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0178802_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0178802_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178802_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178802_66	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0178802_67	PHROG	phrog_2546	NA	unknown function
UHGV-0178802_67	UniRef90	UniRef90_UPI000DEDDB98	zinc ribbon domain-containing protein	NA
UHGV-0178802_67	eggNOG-mapper	1582156.A0A0A8WFW4_9CAUD	NA	NA
UHGV-0178802_67	Structural annotation	PF13240, TIGR04165	NA	NA
UHGV-0178802_68	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178802_68	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0178802_68	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0178802_68	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0178802_68	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0178802_68	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178802_68	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0178802_68	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0178802_71	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0178802_71	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178802_71	UniRef90	UniRef90_A0A417H7V1	XRE family transcriptional regulator	NA
UHGV-0178802_71	eggNOG-mapper	742740.HMPREF9474_04360	Pou domain - N-terminal to homeobox domain	NA
UHGV-0178802_71	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178802_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178802_71	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0178802_71	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0178802_72	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0178802_72	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178802_75	Structural annotation	COG3311	NA	NA
UHGV-0178802_78	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0178802_78	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0178802_79	PHROG	phrog_4433	NA	unknown function
UHGV-0178802_79	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0178802_79	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178802_79	Structural annotation	NF000318	NA	NA