UHGV-0178811

Genome information

Genome length 35,494 bps

CDS count 53

Completeness 96.91% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178811
vOTU ID	vOTU-066096
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584660
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.54
Jumbo phage	No

Genome content
Genome length	35,494 bps
GC content	49.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.87%
Average CDS length	611.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178811_1	PHROG	phrog_3366	NA	unknown function
UHGV-0178811_1	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0178811_1	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0178811_2	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178811_2	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0178811_3	PHROG	phrog_422	major head protein	head and packaging
UHGV-0178811_3	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0178811_3	eggNOG-mapper	641112.ACOK01000073_gene2894	NA	NA
UHGV-0178811_3	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0178811_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178811_4	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0178811_4	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0178811_4	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0178811_5	PHROG	phrog_872	NA	unknown function
UHGV-0178811_5	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0178811_5	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0178811_5	Pfam	PF11195	NA	DUF2829
UHGV-0178811_5	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0178811_5	Structural annotation	PF11195	NA	NA
UHGV-0178811_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178811_6	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0178811_6	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0178811_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178811_6	COG	COG2369	NA	NA
UHGV-0178811_6	Structural annotation	PF06152	NA	NA
UHGV-0178811_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178811_7	UniRef90	UniRef90_UPI001C1263AE	phage portal protein	NA
UHGV-0178811_7	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0178811_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178811_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178811_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0178811_8	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0178811_8	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0178811_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178811_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178811_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178811_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178811_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178811_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0178811_9	UniRef90	UniRef90_R6QUI1	Phage terminase small subunit	NA
UHGV-0178811_9	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0178811_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178811_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178811_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0178811_10	PHROG	phrog_20533	NA	unknown function
UHGV-0178811_10	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-0178811_10	eggNOG-mapper	521097.Coch_0894	NA	NA
UHGV-0178811_10	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0178811_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178811_11	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0178811_13	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0178811_13	PHROG	phrog_5696	NA	unknown function
UHGV-0178811_13	UniRef90	UniRef90_A0A8E3SKS1	N-6 DNA methylase	NA
UHGV-0178811_13	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0178811_13	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-0178811_13	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0178811_13	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0178811_13	Structural annotation	COG0286	NA	NA
UHGV-0178811_15	PHROG	phrog_13489	NA	unknown function
UHGV-0178811_15	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0178811_19	Structural annotation	PF04012	NA	NA
UHGV-0178811_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178811_20	UniRef90	UniRef90_UPI001D02526C	NA	NA
UHGV-0178811_20	eggNOG-mapper	1035196.HMPREF9998_01736	NA	NA
UHGV-0178811_20	Pfam	PF06356	NA	DUF1064
UHGV-0178811_20	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0178811_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178811_21	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0178811_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178811_21	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0178811_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178811_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178811_22	UniRef90	UniRef90_UPI001D0150B1	single-stranded DNA-binding protein	NA
UHGV-0178811_22	eggNOG-mapper	411473.RUMCAL_03263	Single-stranded DNA-binding protein	NA
UHGV-0178811_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178811_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178811_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178811_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178811_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0178811_23	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178811_23	UniRef90	UniRef90_A0A3D4KYN1	NA	NA
UHGV-0178811_23	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0178811_23	Pfam	PF12684	NA	DUF3799
UHGV-0178811_23	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0178811_23	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0178811_24	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178811_24	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0178811_24	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0178811_24	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0178811_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178811_30	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0178811_30	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178811_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178811_30	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0178811_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178811_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0178811_34	UniRef90	UniRef90_A0A5C0SEH3	Bro-N domain-containing protein	NA
UHGV-0178811_34	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0178811_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178811_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178811_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0178811_34	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0178811_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178811_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178811_37	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0178811_37	eggNOG-mapper	411473.RUMCAL_00406	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178811_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178811_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178811_38	PHROG	phrog_1914	NA	unknown function
UHGV-0178811_38	UniRef90	UniRef90_R7FBB0	Putative toxin-antitoxin system toxin component	NA
UHGV-0178811_38	eggNOG-mapper	1160721.RBI_II00490	NA	NA
UHGV-0178811_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0178811_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0178811_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0178811_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178811_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0178811_40	UniRef90	UniRef90_UPI001D01BFE6	recombinase family protein	NA
UHGV-0178811_40	eggNOG-mapper	1384066.JAGT01000001_gene828	Resolvase, N terminal domain	NA
UHGV-0178811_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178811_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178811_40	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178811_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178811_40	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0178811_41	eggNOG-mapper	634956.Geoth_0775	NA	NA
UHGV-0178811_42	PHROG	phrog_25567	NA	unknown function
UHGV-0178811_42	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0178811_42	AcrCatalog	cluster_37554	NA	NA
UHGV-0178811_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178811_44	PHROG	phrog_15001	endolysin	lysis
UHGV-0178811_44	UniRef90	UniRef90_UPI001D02251E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178811_44	eggNOG-mapper	411473.RUMCAL_00618	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178811_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178811_44	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0178811_44	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0178811_45	PHROG	phrog_199	holin	lysis
UHGV-0178811_45	UniRef90	UniRef90_UPI001D02B647	phage holin family protein	NA
UHGV-0178811_45	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0178811_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178811_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178811_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178811_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178811_46	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0178811_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178811_48	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0178811_48	UniRef90	UniRef90_A0A1G5CPJ5	Phage-related minor tail protein	NA
UHGV-0178811_48	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0178811_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178811_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0178811_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0178811_49	PHROG	phrog_706	NA	unknown function
UHGV-0178811_49	UniRef90	UniRef90_R6WB95	Bacteriophage Gp15 protein	NA
UHGV-0178811_49	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0178811_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178811_49	Structural annotation	PF06854	NA	NA
UHGV-0178811_50	PHROG	phrog_4450	NA	unknown function
UHGV-0178811_50	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0178811_50	Pfam	PF20378	NA	DUF6673
UHGV-0178811_50	Structural annotation	PF20378	NA	NA
UHGV-0178811_51	PHROG	phrog_3099	NA	unknown function
UHGV-0178811_51	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0178811_51	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0178811_52	PHROG	phrog_3266	tail completion	connector
UHGV-0178811_52	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0178811_52	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0178811_52	Structural annotation	PF12691	NA	NA
UHGV-0178811_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178811_53	UniRef90	UniRef90_UPI00189988A1	minor capsid protein	NA
UHGV-0178811_53	eggNOG-mapper	1120746.CCNL01000014_gene2100	Minor capsid protein	NA
UHGV-0178811_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178811_53	Structural annotation	PF11114	NA	NA