UHGV-0178813

Genome information

Genome length 36,359 bps

CDS count 67

Completeness 92.06% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178813
vOTU ID	vOTU-066098
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584654
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.51
Jumbo phage	No

Genome content
Genome length	36,359 bps
GC content	50.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.96%
Average CDS length	496.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178813_1	PHROG	phrog_27197	NA	unknown function
UHGV-0178813_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0178813_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178813_1	Structural annotation	NF007410	NA	NA
UHGV-0178813_2	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0178813_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178813_4	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0178813_4	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0178813_4	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0178813_5	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0178813_5	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0178813_12	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0178813_13	UniRef90	UniRef90_J9CYX8	DNA modification methylase	NA
UHGV-0178813_13	eggNOG-mapper	1123304.AQYA01000037_gene207	DNA methylase	NA
UHGV-0178813_13	COG	COG0863	DNA modification methylase	NA
UHGV-0178813_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0178813_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0178813_14	UniRef90	UniRef90_A0A8D9PDC5	Adenine specific DNA methyltransferase	NA
UHGV-0178813_14	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0178813_14	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0178813_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178813_14	COG	COG0863	DNA modification methylase	NA
UHGV-0178813_14	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0178813_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178813_17	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0178813_17	eggNOG-mapper	1121428.DESHY_10050___1	NA	NA
UHGV-0178813_17	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0178813_18	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0178813_18	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0178813_18	Structural annotation	PF13542	NA	NA
UHGV-0178813_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178813_19	PHROG	phrog_10250	NA	unknown function
UHGV-0178813_19	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0178813_19	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0178813_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178813_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178813_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178813_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178813_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178813_20	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0178813_20	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0178813_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178813_22	PHROG	phrog_9479	NA	unknown function
UHGV-0178813_22	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0178813_22	Structural annotation	PF15529	NA	NA
UHGV-0178813_23	PHROG	phrog_8680	NA	unknown function
UHGV-0178813_23	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0178813_23	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0178813_23	Pfam	PF14386	NA	DUF4417
UHGV-0178813_23	Structural annotation	PF14386	NA	NA
UHGV-0178813_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178813_24	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0178813_24	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0178813_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178813_24	COG	COG2369	NA	NA
UHGV-0178813_24	Structural annotation	PF06152	NA	NA
UHGV-0178813_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178813_25	UniRef90	UniRef90_D4LDW9	Phage minor structural protein GP20	NA
UHGV-0178813_25	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0178813_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178813_25	Structural annotation	PF06810	NA	NA
UHGV-0178813_26	PHROG	phrog_283	major head protein	head and packaging
UHGV-0178813_26	UniRef90	UniRef90_A0A174ACN4	p22 coat protein-gene protein 5	NA
UHGV-0178813_26	eggNOG-mapper	1504822.CCNO01000013_gene282	P22 coat protein - gene protein 5	NA
UHGV-0178813_26	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0178813_26	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178813_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178813_27	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0178813_28	PHROG	phrog_1233	NA	unknown function
UHGV-0178813_28	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0178813_28	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0178813_29	PHROG	phrog_3366	NA	unknown function
UHGV-0178813_29	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0178813_29	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0178813_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178813_30	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0178813_30	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0178813_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178813_30	Structural annotation	PF11114	NA	NA
UHGV-0178813_31	PHROG	phrog_3266	tail completion	connector
UHGV-0178813_31	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0178813_31	Structural annotation	PF12691	NA	NA
UHGV-0178813_32	PHROG	phrog_3099	NA	unknown function
UHGV-0178813_32	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0178813_32	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0178813_33	PHROG	phrog_706	NA	unknown function
UHGV-0178813_33	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0178813_33	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0178813_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178813_33	Structural annotation	PF06854	NA	NA
UHGV-0178813_34	PHROG	phrog_23464	NA	unknown function
UHGV-0178813_34	eggNOG-mapper	1123311.KB904448_gene29	Phage tail tape measure protein	NA
UHGV-0178813_34	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0178813_35	PHROG	phrog_1194	NA	unknown function
UHGV-0178813_35	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0178813_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0178813_36	PHROG	phrog_13879	NA	unknown function
UHGV-0178813_36	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0178813_36	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0178813_37	PHROG	phrog_18725	NA	unknown function
UHGV-0178813_37	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0178813_39	Structural annotation	PF03425, NF038128, COG5156	NA	NA
UHGV-0178813_42	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0178813_42	PHROG	phrog_894	endolysin	lysis
UHGV-0178813_42	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0178813_42	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0178813_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178813_42	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0178813_42	COG	COG3108	NA	NA
UHGV-0178813_42	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0178813_43	PHROG	phrog_4105	NA	unknown function
UHGV-0178813_43	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0178813_43	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0178813_44	PHROG	phrog_10091	holin	lysis
UHGV-0178813_44	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0178813_44	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0178813_44	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0178813_44	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0178813_44	COG	COG5546	NA	NA
UHGV-0178813_44	Structural annotation	COG5546	NA	NA
UHGV-0178813_45	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0178813_49	KOfam	K14059	int; integrase	NA
UHGV-0178813_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0178813_49	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0178813_49	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0178813_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178813_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178813_49	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0178813_51	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0178813_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178813_51	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0178813_52	eggNOG-mapper	1280676.AUJO01000035_gene2160	NA	NA
UHGV-0178813_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178813_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178813_53	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0178813_53	eggNOG-mapper	888727.HMPREF9092_1529	NA	NA
UHGV-0178813_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178813_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178813_53	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0178813_54	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-0178813_54	eggNOG-mapper	596329.HMPREF0631_1345	NA	NA
UHGV-0178813_54	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0178813_57	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0178813_61	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0178813_61	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0178813_61	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0178813_62	PHROG	phrog_1029	NA	unknown function
UHGV-0178813_62	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0178813_62	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0178813_65	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-0178813_65	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0178813_65	Pfam	PF06378	NA	DUF1071
UHGV-0178813_65	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0178813_66	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178813_66	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0178813_66	eggNOG-mapper	1462526.BN990_01808	NA	NA
UHGV-0178813_66	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0178813_66	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178813_67	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0178813_67	eggNOG-mapper	445972.ANACOL_01825	NA	NA