UHGV-0178814

Genome information

Genome length 36,549 bps

CDS count 58

Completeness 92.18% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178814
vOTU ID	vOTU-066091
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584652
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.45
Jumbo phage	No

Genome content
Genome length	36,549 bps
GC content	59.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.79%
Average CDS length	584.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178814_1	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0178814_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178814_3	UniRef90	UniRef90_UPI00195B715F	NA	NA
UHGV-0178814_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0178814_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178814_3	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0178814_6	PHROG	phrog_824	NA	unknown function
UHGV-0178814_6	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0178814_6	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0178814_6	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0178814_6	Structural annotation	PF08774	NA	NA
UHGV-0178814_7	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0178814_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178814_7	UniRef90	UniRef90_UPI001C63D655	DEAD/DEAH box helicase	NA
UHGV-0178814_7	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0178814_7	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0178814_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0178814_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0178814_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0178814_7	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0178814_8	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0178814_8	UniRef90	UniRef90_UPI000C77A760	NA	NA
UHGV-0178814_8	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0178814_8	Pfam	PF06048	NA	DUF927
UHGV-0178814_8	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0178814_8	COG	COG5519	NA	NA
UHGV-0178814_8	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0178814_9	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0178814_9	PHROG	phrog_11992	NA	unknown function
UHGV-0178814_9	UniRef90	UniRef90_UPI0004AF39DD	CHC2 zinc finger domain-containing protein	NA
UHGV-0178814_9	eggNOG-mapper	1235798.C817_05852	NA	NA
UHGV-0178814_9	PADLOC	drt-cluster192	DRT	DRT
UHGV-0178814_9	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0178814_9	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0178814_10	PHROG	phrog_18107	NA	unknown function
UHGV-0178814_10	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0178814_10	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0178814_10	Structural annotation	PF05037	NA	NA
UHGV-0178814_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178814_12	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0178814_12	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0178814_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178814_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0178814_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178814_13	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0178814_13	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0178814_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178814_13	Structural annotation	PF05565	NA	NA
UHGV-0178814_15	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0178814_19	Structural annotation	PF11034	NA	NA
UHGV-0178814_21	PHROG	phrog_21028	NA	unknown function
UHGV-0178814_21	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0178814_21	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0178814_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178814_23	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0178814_23	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0178814_23	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0178814_23	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0178814_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178814_23	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0178814_23	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0178814_23	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0178814_24	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0178814_24	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0178814_24	UniRef90	UniRef90_A0A3A6CNZ7	XRE family transcriptional regulator	NA
UHGV-0178814_24	eggNOG-mapper	411465.PEPMIC_00039	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178814_24	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178814_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178814_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178814_24	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178814_25	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0178814_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178814_25	UniRef90	UniRef90_R6WK78	HTH cro/C1-type domain-containing protein	NA
UHGV-0178814_25	eggNOG-mapper	1444310.JANV01000024_gene1355	Peptidase S24-like	NA
UHGV-0178814_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0178814_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178814_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0178814_26	PHROG	phrog_87	metallo-protease	other
UHGV-0178814_26	UniRef90	UniRef90_D1PLA2	Peptidase_M78 domain-containing protein	NA
UHGV-0178814_26	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-0178814_26	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0178814_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0178814_27	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178814_27	UniRef90	UniRef90_A0A7M2RF22	HNH endonuclease	NA
UHGV-0178814_27	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0178814_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178814_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178814_27	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0178814_30	UniRef90	UniRef90_UPI0004E14035	virulence RhuM family protein	NA
UHGV-0178814_30	eggNOG-mapper	1408311.JNJM01000013_gene2253	Virulence protein RhuM family	NA
UHGV-0178814_30	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0178814_30	COG	COG3943	NA	NA
UHGV-0178814_30	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0178814_31	KOfam	K14059	int; integrase	NA
UHGV-0178814_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0178814_31	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-0178814_31	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0178814_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178814_31	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0178814_31	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0178814_32	PHROG	phrog_1129	holin	lysis
UHGV-0178814_32	UniRef90	UniRef90_UPI001F43F0BF	phage holin family protein	NA
UHGV-0178814_32	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0178814_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178814_32	Structural annotation	PF06946	NA	NA
UHGV-0178814_33	PHROG	phrog_1863	NA	unknown function
UHGV-0178814_33	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0178814_34	KOfam	K07273	acm; lysozyme	NA
UHGV-0178814_34	PHROG	phrog_291	endolysin	lysis
UHGV-0178814_34	UniRef90	UniRef90_UPI00164A97A0	glycoside hydrolase family 25 protein	NA
UHGV-0178814_34	eggNOG-mapper	537013.CLOSTMETH_03464	Glycosyl hydrolases family 25	NA
UHGV-0178814_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178814_34	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178814_34	Structural annotation	PF01183, PF05194, COG3757	NA	NA
UHGV-0178814_36	eggNOG-mapper	290402.Cbei_3386	NA	NA
UHGV-0178814_37	PHROG	phrog_13589	NA	unknown function
UHGV-0178814_37	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0178814_39	Structural annotation	PF12245	NA	NA
UHGV-0178814_40	PHROG	phrog_9534	head protein	head and packaging
UHGV-0178814_40	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0178814_40	Structural annotation	PF13157	NA	NA
UHGV-0178814_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0178814_41	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0178814_41	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0178814_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0178814_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178814_42	PHROG	phrog_36410	NA	unknown function
UHGV-0178814_42	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0178814_42	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0178814_42	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0178814_43	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0178814_43	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0178814_43	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0178814_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178814_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178814_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0178814_43	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0178814_44	PHROG	phrog_1633	NA	unknown function
UHGV-0178814_44	UniRef90	UniRef90_A0A7X8VI48	NA	NA
UHGV-0178814_44	eggNOG-mapper	1321372.AQQB01000060_gene71	NA	NA
UHGV-0178814_44	Pfam	PF17318	NA	DUF5361
UHGV-0178814_44	Structural annotation	PF17318	NA	NA
UHGV-0178814_45	PHROG	phrog_1526	NA	unknown function
UHGV-0178814_45	eggNOG-mapper	879308.HMPREF9130_1240	NA	NA
UHGV-0178814_46	PHROG	phrog_117	major tail protein	tail
UHGV-0178814_46	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-0178814_46	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0178814_46	COG	COG5492	NA	NA
UHGV-0178814_46	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0178814_47	PHROG	phrog_123	tail terminator	connector
UHGV-0178814_47	eggNOG-mapper	879308.HMPREF9130_1238	NA	NA
UHGV-0178814_47	Structural annotation	PF06141	NA	NA
UHGV-0178814_48	PHROG	phrog_387	neck protein	connector
UHGV-0178814_48	UniRef90	UniRef90_A0A139P1H9	Phage-associated protein	NA
UHGV-0178814_48	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0178814_49	PHROG	phrog_501	head closure Hc1	connector
UHGV-0178814_49	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0178814_49	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0178814_49	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0178814_50	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0178814_50	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0178814_50	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0178814_50	Structural annotation	PF09355	NA	NA
UHGV-0178814_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178814_51	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0178814_51	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0178814_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178814_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178814_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178814_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178814_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178814_52	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0178814_52	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0178814_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178814_52	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0178814_53	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0178814_53	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0178814_53	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0178814_54	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0178814_54	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0178814_54	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0178814_54	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0178814_54	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0178814_55	PHROG	phrog_104	portal protein	head and packaging
UHGV-0178814_55	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0178814_55	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178814_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178814_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178814_56	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0178814_56	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0178814_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178814_56	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0178814_57	Structural annotation	PF19962	NA	NA
UHGV-0178814_58	PHROG	phrog_1035	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0178814_58	UniRef90	UniRef90_A0A7L5AQ38	HNH endonuclease	NA
UHGV-0178814_58	eggNOG-mapper	1321786.HMPREF1992_01525	domain protein	NA
UHGV-0178814_58	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178814_58	COG	COG1061	Superfamily II DNA or RNA helicase	NA