UHGV-0178852

Genome information

Genome length 37,560 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178852
vOTU ID	vOTU-046665
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588186
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.21
Jumbo phage	No

Genome content
Genome length	37,560 bps
GC content	56.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.42%
Average CDS length	549.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178852_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0178852_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178852_4	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-0178852_4	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178852_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0178852_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178852_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178852_5	UniRef90	UniRef90_A0A4S2A8J1	PBECR3 domain-containing protein	NA
UHGV-0178852_5	eggNOG-mapper	768710.DesyoDRAFT_3557	NA	NA
UHGV-0178852_5	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0178852_5	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0178852_8	KOfam	K14059	int; integrase	NA
UHGV-0178852_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0178852_8	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0178852_8	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0178852_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178852_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178852_8	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0178852_10	Structural annotation	PF17917	NA	NA
UHGV-0178852_13	PHROG	phrog_15863	NA	unknown function
UHGV-0178852_13	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0178852_13	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0178852_13	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0178852_15	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0178852_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178852_18	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0178852_18	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0178852_18	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0178852_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178852_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178852_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178852_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0178852_20	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0178852_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178852_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0178852_22	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0178852_22	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0178852_22	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0178852_22	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178852_23	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0178852_23	Structural annotation	PF11650	NA	NA
UHGV-0178852_24	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0178852_24	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0178852_24	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0178852_25	PHROG	phrog_892	tail fiber protein	tail
UHGV-0178852_25	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-0178852_25	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0178852_25	Structural annotation	PF19789	NA	NA
UHGV-0178852_26	eggNOG-mapper	742733.HMPREF9469_05015	NA	NA
UHGV-0178852_26	Structural annotation	PF10618	NA	NA
UHGV-0178852_27	PHROG	phrog_1382	NA	unknown function
UHGV-0178852_27	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0178852_27	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0178852_27	Structural annotation	NF040910	NA	NA
UHGV-0178852_28	PHROG	phrog_21357	endolysin	lysis
UHGV-0178852_28	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0178852_28	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0178852_28	Pfam	PF05257	CHAP domain	CHAP
UHGV-0178852_28	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0178852_28	COG	COG1388	LysM repeat	NA
UHGV-0178852_28	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0178852_29	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0178852_30	UniRef90	UniRef90_A0A1C6H462	LPD3 domain-containing protein	NA
UHGV-0178852_30	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0178852_31	PHROG	phrog_37604	NA	unknown function
UHGV-0178852_31	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0178852_32	PHROG	phrog_1129	holin	lysis
UHGV-0178852_32	UniRef90	UniRef90_UPI000B35DBBB	phage holin family protein	NA
UHGV-0178852_32	eggNOG-mapper	1007096.BAGW01000035_gene1305	NA	NA
UHGV-0178852_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178852_32	Structural annotation	PF06946	NA	NA
UHGV-0178852_34	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0178852_34	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0178852_34	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0178852_46	PHROG	phrog_924	NA	unknown function
UHGV-0178852_46	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0178852_46	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0178852_46	Pfam	PF04448	NA	DUF551
UHGV-0178852_46	Structural annotation	PF21627	NA	NA
UHGV-0178852_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178852_50	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0178852_50	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0178852_50	Structural annotation	PF17375	NA	NA
UHGV-0178852_51	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178852_51	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0178852_51	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0178852_51	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0178852_51	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0178852_53	PHROG	phrog_18306	NA	unknown function
UHGV-0178852_53	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0178852_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178852_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178852_54	UniRef90	UniRef90_H1CGV1	IstB_IS21 domain-containing protein	NA
UHGV-0178852_54	eggNOG-mapper	1232447.BAHW02000027_gene2105	NA	NA
UHGV-0178852_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0178852_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178852_54	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0178852_55	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178852_55	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0178852_55	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0178852_55	Structural annotation	PF10771, NF041413, COG0735	NA	NA
UHGV-0178852_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178852_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178852_56	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0178852_56	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0178852_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178852_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178852_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178852_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178852_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178852_57	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178852_57	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0178852_57	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0178852_57	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178852_58	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0178852_58	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178852_58	Structural annotation	PF05772	NA	NA
UHGV-0178852_59	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178852_59	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0178852_59	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0178852_59	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178852_59	Structural annotation	PF04404, COG4712	NA	NA