UHGV-0178901

Genome information

Genome length 42,012 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178901
vOTU ID	vOTU-006506
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582754
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.1
Jumbo phage	No

Genome content
Genome length	42,012 bps
GC content	41.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.74%
Average CDS length	686.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178901_1	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178901_1	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0178901_1	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-0178901_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178901_2	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178901_2	UniRef90	UniRef90_A0A352SFW0	HNH endonuclease	NA
UHGV-0178901_2	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0178901_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0178901_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178901_2	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0178901_3	PHROG	phrog_20593	NA	unknown function
UHGV-0178901_5	PHROG	phrog_10714	NA	unknown function
UHGV-0178901_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178901_6	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0178901_6	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0178901_6	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0178901_7	PHROG	phrog_16304	NA	unknown function
UHGV-0178901_7	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0178901_7	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0178901_7	Pfam	PF19808	NA	DUF6291
UHGV-0178901_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178901_7	Structural annotation	PF19808	NA	NA
UHGV-0178901_8	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0178901_9	PHROG	phrog_1029	NA	unknown function
UHGV-0178901_9	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0178901_9	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0178901_9	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0178901_10	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0178901_10	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0178901_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0178901_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178901_11	UniRef90	UniRef90_A0A417UT37	Recombinase	NA
UHGV-0178901_11	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0178901_11	Pfam	PF03837	RecT family	RecT
UHGV-0178901_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0178901_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0178901_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0178901_14	PHROG	phrog_674	NA	unknown function
UHGV-0178901_14	UniRef90	UniRef90_A0A844E1E5	NA	NA
UHGV-0178901_14	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0178901_14	Pfam	PF07083	NA	DUF1351
UHGV-0178901_14	Structural annotation	PF07083	NA	NA
UHGV-0178901_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178901_15	UniRef90	UniRef90_A0A1C5PRT3	Putative phage-type endonuclease	NA
UHGV-0178901_15	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0178901_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0178901_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0178901_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0178901_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178901_19	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-0178901_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178901_20	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178901_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178901_20	UniRef90	UniRef90_A0A174PA31	Predicted transcriptional regulator	NA
UHGV-0178901_20	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0178901_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178901_20	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178901_21	PHROG	phrog_87	metallo-protease	other
UHGV-0178901_21	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0178901_21	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0178901_21	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0178901_21	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0178901_21	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0178901_22	PHROG	phrog_4852	NA	unknown function
UHGV-0178901_22	UniRef90	UniRef90_A0A1Q9JN20	zinc_ribbon_2 domain-containing protein	NA
UHGV-0178901_22	eggNOG-mapper	877421.AUJT01000030_gene638	response to antibiotic	NA
UHGV-0178901_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0178901_22	COG	COG4640	NA	NA
UHGV-0178901_22	Structural annotation	PF12729	NA	NA
UHGV-0178901_24	KOfam	K14059	int; integrase	NA
UHGV-0178901_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0178901_24	UniRef90	UniRef90_R9J0C8	Tyr recombinase domain-containing protein	NA
UHGV-0178901_24	eggNOG-mapper	397288.C806_00112	Belongs to the 'phage' integrase family	NA
UHGV-0178901_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178901_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178901_24	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0178901_25	PHROG	phrog_2649	endolysin	lysis
UHGV-0178901_25	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178901_25	eggNOG-mapper	742733.HMPREF9469_02856	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0178901_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178901_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0178901_26	PHROG	phrog_199	holin	lysis
UHGV-0178901_26	UniRef90	UniRef90_A0A2H4JCP5	Putative lysis protein	NA
UHGV-0178901_26	eggNOG-mapper	1235800.C819_02219	Bacteriophage holin family	NA
UHGV-0178901_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178901_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178901_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178901_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178901_28	PHROG	phrog_6616	tail protein	tail
UHGV-0178901_28	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0178901_28	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0178901_28	COG	COG4926	Phage-related protein	NA
UHGV-0178901_29	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0178901_29	Structural annotation	PF07761	NA	NA
UHGV-0178901_30	PHROG	phrog_1194	NA	unknown function
UHGV-0178901_30	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0178901_30	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178901_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178901_31	eggNOG-mapper	469596.HMPREF9488_01316	NA	NA
UHGV-0178901_32	PHROG	phrog_706	NA	unknown function
UHGV-0178901_32	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0178901_32	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0178901_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178901_32	Structural annotation	PF06854	NA	NA
UHGV-0178901_33	PHROG	phrog_11299	NA	unknown function
UHGV-0178901_33	Structural annotation	PF10666	NA	NA
UHGV-0178901_34	PHROG	phrog_3099	NA	unknown function
UHGV-0178901_34	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0178901_34	Structural annotation	PF08813, TIGR02126, COG3498	NA	NA
UHGV-0178901_35	PHROG	phrog_3266	tail completion	connector
UHGV-0178901_35	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-0178901_35	Structural annotation	PF12691	NA	NA
UHGV-0178901_36	PHROG	phrog_3366	NA	unknown function
UHGV-0178901_36	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0178901_36	Pfam	PF20536	NA	DUF6751
UHGV-0178901_36	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0178901_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178901_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0178901_38	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0178901_38	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0178901_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0178901_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178901_39	UniRef90	UniRef90_A0A174GWW4	Phage minor structural protein GP20	NA
UHGV-0178901_39	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0178901_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178901_39	Structural annotation	PF06810	NA	NA
UHGV-0178901_42	PHROG	phrog_3675	NA	unknown function
UHGV-0178901_42	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0178901_42	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0178901_42	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0178901_42	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0178901_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178901_44	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0178901_44	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0178901_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178901_44	COG	COG2369	NA	NA
UHGV-0178901_44	Structural annotation	PF06152, PF15542, TIGR01641	NA	NA
UHGV-0178901_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178901_45	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0178901_45	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0178901_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178901_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178901_46	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0178901_46	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0178901_46	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0178901_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178901_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178901_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178901_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178901_47	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0178901_47	eggNOG-mapper	642492.Clole_0813	DNA packaging	NA
UHGV-0178901_47	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0178901_47	COG	COG5484	NA	NA
UHGV-0178901_47	Structural annotation	PF06056, NF040601	NA	NA
UHGV-0178901_49	PHROG	phrog_8680	NA	unknown function
UHGV-0178901_49	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0178901_49	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0178901_49	Pfam	PF14386	NA	DUF4417
UHGV-0178901_49	Structural annotation	PF14386	NA	NA
UHGV-0178901_51	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0178901_51	UniRef90	UniRef90_UPI0008BDD502	radical SAM protein	NA
UHGV-0178901_51	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0178901_51	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0178901_51	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0178901_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178901_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178901_54	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178901_54	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0178901_54	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0178901_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178901_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178901_54	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0178901_55	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0178901_55	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178901_55	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0178901_55	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0178901_55	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0178901_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178901_55	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178901_55	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0178901_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178901_56	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0178901_56	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0178901_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178901_56	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0178901_57	PHROG	phrog_874	NA	unknown function
UHGV-0178901_57	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0178901_57	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0178901_57	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA