UHGV-0178918

Genome information

Genome length 45,538 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178918
vOTU ID	vOTU-046666
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582511
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.57
Jumbo phage	No

Genome content
Genome length	45,538 bps
GC content	52.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.34%
Average CDS length	599.91 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178918_1	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0178918_1	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0178918_1	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0178918_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178918_2	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0178918_2	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178918_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178918_2	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0178918_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0178918_4	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178918_4	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0178918_4	eggNOG-mapper	1410625.JHWK01000005_gene1316	IstB-like ATP binding protein	NA
UHGV-0178918_4	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0178918_4	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0178918_4	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0178918_4	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0178918_5	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178918_5	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-0178918_5	eggNOG-mapper	679200.HMPREF9333_02091	DnaD domain protein	NA
UHGV-0178918_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178918_5	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0178918_6	PHROG	phrog_4973	NA	unknown function
UHGV-0178918_6	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0178918_6	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0178918_6	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0178918_6	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0178918_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178918_7	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178918_7	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178918_7	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0178918_7	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0178918_8	PHROG	phrog_1029	NA	unknown function
UHGV-0178918_8	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0178918_8	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0178918_8	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0178918_9	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0178918_9	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0178918_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178918_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178918_10	UniRef90	UniRef90_A0A3D2HZK1	Single-stranded DNA-binding protein	NA
UHGV-0178918_10	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178918_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178918_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178918_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178918_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178918_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178918_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0178918_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178918_12	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0178918_12	eggNOG-mapper	1238184.CM001792_gene75	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0178918_12	Pfam	PF03837	RecT family	RecT
UHGV-0178918_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0178918_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0178918_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0178918_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178918_13	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0178918_13	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0178918_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0178918_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0178918_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0178918_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178918_16	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0178918_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178918_18	UniRef90	UniRef90_A0A8D9UHB1	Repressor protein CI	NA
UHGV-0178918_18	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0178918_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178918_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178918_18	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178918_19	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0178918_20	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178918_20	PHROG	phrog_95	integrase	integration and excision
UHGV-0178918_20	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0178918_20	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0178918_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178918_20	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178918_20	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0178918_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178918_20	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0178918_21	Structural annotation	PF02255, NF007156, COG1447	NA	NA
UHGV-0178918_24	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0178918_25	PHROG	phrog_10091	holin	lysis
UHGV-0178918_25	UniRef90	UniRef90_A0A374DX82	Phage holin	NA
UHGV-0178918_25	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0178918_25	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0178918_25	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0178918_25	COG	COG5546	NA	NA
UHGV-0178918_25	Structural annotation	COG5546	NA	NA
UHGV-0178918_26	PHROG	phrog_1863	NA	unknown function
UHGV-0178918_26	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0178918_27	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0178918_27	PHROG	phrog_2649	endolysin	lysis
UHGV-0178918_27	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0178918_27	eggNOG-mapper	1121423.JONT01000035_gene915	NA	NA
UHGV-0178918_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178918_27	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0178918_27	COG	COG3108	NA	NA
UHGV-0178918_27	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0178918_28	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0178918_28	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0178918_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178918_28	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0178918_29	PHROG	phrog_2310	NA	unknown function
UHGV-0178918_29	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0178918_31	Structural annotation	PF03425, NF038128, COG5156	NA	NA
UHGV-0178918_32	PHROG	phrog_38044	NA	unknown function
UHGV-0178918_32	eggNOG-mapper	1445858.A0A060AN56_9CAUD	peptidoglycan catabolic process	NA
UHGV-0178918_35	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0178918_35	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0178918_36	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-0178918_36	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0178918_37	PHROG	phrog_1194	NA	unknown function
UHGV-0178918_37	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-0178918_37	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0178918_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178918_38	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0178918_38	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0178918_39	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0178918_40	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0178918_40	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0178918_40	Pfam	PF16478	NA	DUF5055
UHGV-0178918_40	Structural annotation	PF16478	NA	NA
UHGV-0178918_41	PHROG	phrog_158	major tail protein	tail
UHGV-0178918_41	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0178918_41	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0178918_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0178918_42	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0178918_43	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0178918_44	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0178918_45	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0178918_45	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0178918_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0178918_45	Structural annotation	TIGR01560	NA	NA
UHGV-0178918_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0178918_47	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0178918_47	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0178918_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0178918_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178918_50	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0178918_50	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178918_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178918_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178918_51	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0178918_51	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0178918_51	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0178918_51	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0178918_51	COG	COG5410	NA	NA
UHGV-0178918_51	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0178918_52	PHROG	phrog_1233	NA	unknown function
UHGV-0178918_52	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0178918_55	UniRef90	UniRef90_A0A174XWS3	Bacterial regulatory proteins, luxR family	NA
UHGV-0178918_55	eggNOG-mapper	97139.C824_05423	NA	NA
UHGV-0178918_55	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0178918_55	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0178918_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0178918_57	PHROG	phrog_95	integrase	integration and excision
UHGV-0178918_57	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0178918_57	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0178918_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0178918_57	Pfam	PF07508	Recombinase	Recombinase
UHGV-0178918_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0178918_57	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0178918_59	PHROG	phrog_17101	NA	unknown function
UHGV-0178918_61	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0178918_61	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0178918_61	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0178918_66	PHROG	phrog_3136	NA	unknown function
UHGV-0178918_66	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0178918_66	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0178918_66	Pfam	PF04266	ASCH domain	ASCH
UHGV-0178918_66	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0178918_66	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0178918_67	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0178918_69	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0178918_69	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0178918_69	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA