UHGV-0178919

Genome information

vOTU vOTU-019772

Genome length 38,269 bps

CDS count 55

Completeness 89.99% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178919
vOTU ID	vOTU-019772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_566712
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.31
Jumbo phage	No

Genome content
Genome length	38,269 bps
GC content	56.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.70%
Average CDS length	634.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178919_1	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0178919_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178919_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0178919_2	UniRef90	UniRef90_UPI0013565FBF	helix-turn-helix transcriptional regulator	NA
UHGV-0178919_2	eggNOG-mapper	411470.RUMGNA_01610	NA	NA
UHGV-0178919_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178919_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178919_2	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0178919_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178919_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0178919_4	UniRef90	UniRef90_A0A4D7AS91	XRE family transcriptional regulator	NA
UHGV-0178919_4	eggNOG-mapper	693746.OBV_01960	Peptidase S24-like	NA
UHGV-0178919_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178919_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0178919_4	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0178919_4	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0178919_5	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0178919_5	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0178919_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0178919_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178919_7	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-0178919_8	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0178919_10	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0178919_10	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178919_10	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0178919_10	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0178919_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0178919_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178919_10	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178919_10	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0178919_13	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0178919_13	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0178919_13	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0178919_14	PHROG	phrog_1029	NA	unknown function
UHGV-0178919_14	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0178919_14	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0178919_17	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0178919_17	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0178919_17	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0178919_18	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0178919_18	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0178919_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178919_19	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0178919_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0178919_19	Pfam	PF05772	NinB protein	NinB
UHGV-0178919_19	Structural annotation	PF05772	NA	NA
UHGV-0178919_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178919_21	PHROG	phrog_7566	NA	unknown function
UHGV-0178919_21	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0178919_21	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0178919_22	PHROG	phrog_4973	NA	unknown function
UHGV-0178919_22	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0178919_22	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0178919_22	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0178919_22	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0178919_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178919_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178919_23	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0178919_23	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0178919_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178919_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178919_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178919_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178919_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178919_24	Structural annotation	PF11417	NA	NA
UHGV-0178919_25	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178919_25	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178919_25	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0178919_25	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0178919_28	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178919_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178919_28	UniRef90	UniRef90_A0A3R6M557	PAPS_reduct domain-containing protein	NA
UHGV-0178919_28	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0178919_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178919_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178919_28	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0178919_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178919_30	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0178919_34	PHROG	phrog_2412	NA	unknown function
UHGV-0178919_34	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0178919_34	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0178919_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178919_35	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0178919_35	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0178919_35	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0178919_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178919_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178919_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178919_36	PHROG	phrog_22978	NA	unknown function
UHGV-0178919_36	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0178919_37	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-0178919_38	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0178919_38	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0178919_38	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0178919_38	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178919_38	Pfam	PF17891	Mu-like prophage FluMu N-terminal domain	FluMu_N
UHGV-0178919_38	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0178919_39	Structural annotation	PF21722	NA	NA
UHGV-0178919_40	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-0178919_41	PHROG	phrog_18593	NA	unknown function
UHGV-0178919_41	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0178919_41	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0178919_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0178919_41	Structural annotation	PF14600	NA	NA
UHGV-0178919_42	PHROG	phrog_1863	NA	unknown function
UHGV-0178919_42	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0178919_42	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0178919_43	PHROG	phrog_443	holin	lysis
UHGV-0178919_43	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0178919_43	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0178919_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0178919_43	Structural annotation	PF16945	NA	NA
UHGV-0178919_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0178919_44	PHROG	phrog_6745	endolysin	lysis
UHGV-0178919_44	UniRef90	UniRef90_Q3Z7L4	Endolysin, putative	NA
UHGV-0178919_44	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0178919_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178919_44	Pfam	PF05257	CHAP domain	CHAP
UHGV-0178919_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178919_44	COG	COG1388	LysM repeat	NA
UHGV-0178919_44	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0178919_45	KOfam	K14059	int; integrase	NA
UHGV-0178919_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0178919_45	UniRef90	UniRef90_A0A416ZBA5	Site-specific integrase	NA
UHGV-0178919_45	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0178919_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0178919_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178919_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0178919_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0178919_48	UniRef90	UniRef90_A0A1Y4L7G7	HTH iclR-type domain-containing protein	NA
UHGV-0178919_52	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178919_52	UniRef90	UniRef90_A0A845R5M0	XRE family transcriptional regulator	NA
UHGV-0178919_52	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0178919_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178919_52	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0178919_53	PHROG	phrog_6244	NA	unknown function
UHGV-0178919_53	eggNOG-mapper	1378168.N510_01452	NA	NA
UHGV-0178919_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0178919_54	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0178919_54	UniRef90	UniRef90_UPI000D113E67	site-specific DNA-methyltransferase	NA
UHGV-0178919_54	eggNOG-mapper	59374.Fisuc_0069	N-4 methylation of cytosine	NA
UHGV-0178919_54	PADLOC	MTase_II_00001	Type II methyltransferase	RM
UHGV-0178919_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0178919_54	COG	COG0863	DNA modification methylase	NA
UHGV-0178919_54	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0178919_55	UniRef90	UniRef90_A0A1F9VRD4	HTH cro/C1-type domain-containing protein	NA