UHGV-0178936

Genome information

Genome length 37,439 bps

CDS count 60

Completeness 93.84% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178936
vOTU ID	vOTU-061858
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_575335
BioSample	SAMN07449047
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.62
Jumbo phage	No

Genome content
Genome length	37,439 bps
GC content	53.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	86.91%
Average CDS length	544.35 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178936_2	PHROG	phrog_15303	NA	unknown function
UHGV-0178936_3	PHROG	phrog_1863	NA	unknown function
UHGV-0178936_3	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0178936_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0178936_4	PHROG	phrog_291	endolysin	lysis
UHGV-0178936_4	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0178936_4	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0178936_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178936_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178936_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0178936_5	eggNOG-mapper	1235799.C818_03019	cellulase activity	NA
UHGV-0178936_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0178936_5	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0178936_6	PHROG	phrog_18110	NA	unknown function
UHGV-0178936_6	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0178936_6	eggNOG-mapper	871584.D9ZNF0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0178936_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178936_6	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0178936_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178936_7	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-0178936_7	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178936_8	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0178936_8	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0178936_8	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0178936_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0178936_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0178936_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0178936_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0178936_9	PHROG	phrog_706	NA	unknown function
UHGV-0178936_9	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0178936_9	eggNOG-mapper	663278.Ethha_0101	Bacteriophage Gp15 protein	NA
UHGV-0178936_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178936_9	Structural annotation	PF06854	NA	NA
UHGV-0178936_10	Structural annotation	PF20378	NA	NA
UHGV-0178936_11	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0178936_11	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0178936_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178936_12	PHROG	phrog_3266	tail completion	connector
UHGV-0178936_12	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0178936_12	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0178936_12	Structural annotation	PF12691	NA	NA
UHGV-0178936_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178936_13	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-0178936_13	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0178936_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178936_13	Structural annotation	PF11114	NA	NA
UHGV-0178936_14	PHROG	phrog_3366	NA	unknown function
UHGV-0178936_14	Pfam	PF20536	NA	DUF6751
UHGV-0178936_14	Structural annotation	PF20536	NA	NA
UHGV-0178936_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178936_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178936_16	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0178936_16	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0178936_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178936_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178936_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178936_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178936_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178936_17	UniRef90	UniRef90_A0A1C6FYX1	Phage minor structural protein GP20	NA
UHGV-0178936_17	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0178936_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178936_17	Structural annotation	PF06810	NA	NA
UHGV-0178936_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0178936_18	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0178936_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0178936_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178936_19	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0178936_19	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0178936_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178936_19	COG	COG2369	NA	NA
UHGV-0178936_19	Structural annotation	PF06152	NA	NA
UHGV-0178936_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178936_20	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-0178936_20	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0178936_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178936_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178936_21	PHROG	phrog_10250	NA	unknown function
UHGV-0178936_21	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0178936_21	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0178936_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178936_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0178936_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178936_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178936_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0178936_22	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0178936_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0178936_23	UniRef90	UniRef90_E2ZNR3	Radical SAM domain protein	NA
UHGV-0178936_23	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0178936_23	COG	COG1533	DNA repair photolyase	NA
UHGV-0178936_23	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0178936_24	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0178936_24	COG	COG1533	DNA repair photolyase	NA
UHGV-0178936_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178936_25	UniRef90	UniRef90_E2ZNR4	ParB domain-containing protein	NA
UHGV-0178936_25	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0178936_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0178936_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178936_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178936_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178936_27	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0178936_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-0178936_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178936_28	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0178936_28	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0178936_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-0178936_28	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0178936_28	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0178936_29	PHROG	phrog_3253	NA	unknown function
UHGV-0178936_29	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0178936_29	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0178936_29	Structural annotation	PF18618	NA	NA
UHGV-0178936_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0178936_30	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-0178936_30	eggNOG-mapper	1203606.HMPREF1526_01892	NA	NA
UHGV-0178936_30	Structural annotation	PF18895, MF_01019, NF002747	NA	NA
UHGV-0178936_31	PHROG	phrog_6568	NA	unknown function
UHGV-0178936_31	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0178936_33	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178936_33	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0178936_33	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0178936_33	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178936_33	Structural annotation	PF05565	NA	NA
UHGV-0178936_34	Structural annotation	PF11417	NA	NA
UHGV-0178936_35	PHROG	phrog_15768	NA	unknown function
UHGV-0178936_35	UniRef90	UniRef90_A0A844EFV2	NA	NA
UHGV-0178936_35	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0178936_35	Pfam	PF19808	NA	DUF6291
UHGV-0178936_35	Structural annotation	PF19808	NA	NA
UHGV-0178936_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178936_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178936_36	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0178936_36	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178936_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178936_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178936_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178936_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178936_36	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0178936_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178936_37	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0178936_37	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0178936_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178936_37	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0178936_38	PHROG	phrog_38771	NA	unknown function
UHGV-0178936_40	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0178936_41	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0178936_41	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0178936_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0178936_41	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0178936_42	UniRef90	UniRef90_E2ZNT7	HTH_17 domain-containing protein	NA
UHGV-0178936_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0178936_42	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0178936_43	PHROG	phrog_37083	NA	unknown function
UHGV-0178936_44	PHROG	phrog_1221	NA	unknown function
UHGV-0178936_44	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-0178936_44	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-0178936_44	Pfam	PF06067	NA	DUF932
UHGV-0178936_44	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0178936_44	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0178936_47	UniRef90	UniRef90_A0A6N7TMW8	HTH cro/C1-type domain-containing protein	NA
UHGV-0178936_49	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0178936_49	UniRef90	UniRef90_UPI001876A0BB	Ltp family lipoprotein	NA
UHGV-0178936_49	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0178936_49	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0178936_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0178936_49	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0178936_52	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0178936_52	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0178936_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178936_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178936_52	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178936_54	KOfam	K14059	int; integrase	NA
UHGV-0178936_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0178936_54	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0178936_54	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0178936_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0178936_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178936_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178936_54	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0178936_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178936_57	PHROG	phrog_16490	NA	unknown function
UHGV-0178936_57	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0178936_58	PHROG	phrog_22984	NA	unknown function