UHGV-0178986

Genome information

Genome length 36,056 bps

CDS count 61

Completeness 88.32% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178986
vOTU ID	vOTU-029049
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585257
BioSample	SAMN09781738
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.29
Jumbo phage	No

Genome content
Genome length	36,056 bps
GC content	50.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.00%
Average CDS length	558.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178986_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0178986_2	Structural annotation	PF12510	NA	NA
UHGV-0178986_3	PHROG	phrog_20016	NA	unknown function
UHGV-0178986_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0178986_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0178986_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178986_4	PHROG	phrog_16490	NA	unknown function
UHGV-0178986_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0178986_5	PHROG	phrog_22984	NA	unknown function
UHGV-0178986_6	PHROG	phrog_21718	NA	unknown function
UHGV-0178986_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0178986_7	PHROG	phrog_3754	NA	unknown function
UHGV-0178986_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0178986_8	KOfam	K02479	K02479; two-component system, NarL family, response regulator	NA
UHGV-0178986_8	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0178986_8	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0178986_8	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0178986_9	PHROG	phrog_13256	NA	unknown function
UHGV-0178986_9	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0178986_10	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0178986_10	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0178986_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0178986_11	PHROG	phrog_291	endolysin	lysis
UHGV-0178986_11	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0178986_11	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0178986_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0178986_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178986_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178986_11	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0178986_13	PHROG	phrog_32509	NA	unknown function
UHGV-0178986_13	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0178986_13	Structural annotation	PF10651	NA	NA
UHGV-0178986_16	PHROG	phrog_9534	head protein	head and packaging
UHGV-0178986_16	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0178986_16	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0178986_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0178986_17	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0178986_17	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0178986_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0178986_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178986_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178986_18	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0178986_18	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0178986_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178986_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0178986_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0178986_19	UniRef90	UniRef90_A0A6N8JML2	Phage tail tape measure protein	NA
UHGV-0178986_19	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0178986_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178986_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178986_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0178986_19	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0178986_21	PHROG	phrog_18646	NA	unknown function
UHGV-0178986_22	PHROG	phrog_885	major tail protein	tail
UHGV-0178986_22	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0178986_22	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0178986_22	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0178986_23	Structural annotation	PF11367	NA	NA
UHGV-0178986_24	PHROG	phrog_17977	NA	unknown function
UHGV-0178986_24	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0178986_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178986_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0178986_27	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0178986_27	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0178986_27	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0178986_27	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178986_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178986_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0178986_28	Structural annotation	PF06810	NA	NA
UHGV-0178986_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0178986_29	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0178986_29	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0178986_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178986_30	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0178986_30	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0178986_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178986_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178986_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178986_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0178986_32	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0178986_32	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0178986_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178986_32	COG	COG2369	NA	NA
UHGV-0178986_32	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0178986_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178986_34	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0178986_34	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178986_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178986_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178986_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178986_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0178986_35	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0178986_35	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0178986_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178986_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0178986_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178986_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178986_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0178986_37	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0178986_37	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0178986_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0178986_38	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178986_38	UniRef90	UniRef90_UPI001E2E3568	ParB N-terminal domain-containing protein	NA
UHGV-0178986_38	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0178986_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0178986_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178986_38	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0178986_39	PHROG	phrog_419	NA	unknown function
UHGV-0178986_39	UniRef90	UniRef90_A0A1L5L3J8	PGDYG protein (Fragment)	NA
UHGV-0178986_39	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0178986_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178986_40	UniRef90	UniRef90_A0A8J6J9G8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0178986_40	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0178986_40	Pfam	PF07374	NA	DUF1492
UHGV-0178986_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178986_40	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0178986_41	PHROG	phrog_924	NA	unknown function
UHGV-0178986_41	UniRef90	UniRef90_A0A4R4IL87	NA	NA
UHGV-0178986_41	Pfam	PF04448	NA	DUF551
UHGV-0178986_41	Structural annotation	NF041588	NA	NA
UHGV-0178986_44	PHROG	phrog_9958	NA	unknown function
UHGV-0178986_44	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0178986_44	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0178986_44	Structural annotation	PF19789	NA	NA
UHGV-0178986_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178986_45	UniRef90	UniRef90_R6PFX4	Putative phage reductase	NA
UHGV-0178986_45	eggNOG-mapper	1378168.N510_03347	NA	NA
UHGV-0178986_45	PADLOC	SspD_00001	SspD	SSP
UHGV-0178986_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178986_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178986_45	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0178986_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178986_52	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178986_52	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178986_52	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0178986_52	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0178986_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178986_52	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0178986_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178986_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178986_55	UniRef90	UniRef90_A0A316NVS3	DNA helicase	NA
UHGV-0178986_55	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0178986_55	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178986_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178986_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178986_55	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178986_56	PHROG	phrog_15768	NA	unknown function
UHGV-0178986_56	UniRef90	UniRef90_F2JQT3	Phage regulatory protein	NA
UHGV-0178986_56	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0178986_56	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0178986_57	PHROG	phrog_4973	NA	unknown function
UHGV-0178986_57	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0178986_57	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0178986_57	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0178986_57	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0178986_58	eggNOG-mapper	1203606.HMPREF1526_00240	NA	NA
UHGV-0178986_59	PHROG	phrog_18107	NA	unknown function
UHGV-0178986_59	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0178986_59	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0178986_59	Structural annotation	PF05037	NA	NA
UHGV-0178986_60	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178986_60	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0178986_60	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0178986_60	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178986_60	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA