UHGV-0179016

Genome information

Genome length 33,139 bps

CDS count 50

Completeness 85.38% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179016
vOTU ID	vOTU-029050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577049
BioSample	SAMN07501162
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.21
Jumbo phage	No

Genome content
Genome length	33,139 bps
GC content	33.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.77%
Average CDS length	624.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179016_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0179016_1	UniRef90	UniRef90_UPI001F4EB82A	phage tail protein	NA
UHGV-0179016_1	eggNOG-mapper	1158604.I591_00413	Prophage endopeptidase tail	NA
UHGV-0179016_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179016_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179016_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0179016_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179016_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179016_2	UniRef90	UniRef90_A0A1L2GWH5	Phage tail protein	NA
UHGV-0179016_2	eggNOG-mapper	1158604.I591_00412	tail component	NA
UHGV-0179016_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179016_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179016_3	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0179016_3	UniRef90	UniRef90_A0A2C9X4D2	TMP_3 domain-containing protein	NA
UHGV-0179016_3	eggNOG-mapper	1158604.I591_00411	Phage tail tape measure protein, TP901 family	NA
UHGV-0179016_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179016_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179016_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179016_3	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0179016_4	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0179016_4	eggNOG-mapper	1158604.I591_00410	NA	NA
UHGV-0179016_5	PHROG	phrog_88	major tail protein	tail
UHGV-0179016_5	UniRef90	UniRef90_A0A4V3RFT0	Phage tail protein	NA
UHGV-0179016_5	eggNOG-mapper	1158604.I591_00409	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0179016_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179016_5	COG	COG5492	NA	NA
UHGV-0179016_5	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0179016_6	PHROG	phrog_525	NA	unknown function
UHGV-0179016_6	eggNOG-mapper	1158604.I591_00408	NA	NA
UHGV-0179016_6	Pfam	PF20765	NA	DUF6838
UHGV-0179016_6	Structural annotation	PF20765	NA	NA
UHGV-0179016_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179016_7	UniRef90	UniRef90_UPI0018832E9E	HK97 gp10 family phage protein	NA
UHGV-0179016_7	eggNOG-mapper	1158604.I591_00407	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179016_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179016_7	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0179016_8	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0179016_8	UniRef90	UniRef90_R3I753	50S ribosomal protein L23	NA
UHGV-0179016_8	eggNOG-mapper	1158604.I591_00406	NA	NA
UHGV-0179016_8	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0179016_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0179016_9	eggNOG-mapper	1158604.I591_00405	NA	NA
UHGV-0179016_10	PHROG	phrog_8832	NA	unknown function
UHGV-0179016_10	eggNOG-mapper	1158604.I591_00404	NA	NA
UHGV-0179016_11	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0179016_11	UniRef90	UniRef90_UPI00065DF913	NA	NA
UHGV-0179016_11	eggNOG-mapper	1158604.I591_00403	NA	NA
UHGV-0179016_11	Pfam	PF17236	NA	DUF5309
UHGV-0179016_11	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0179016_12	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0179016_12	UniRef90	UniRef90_A0A1Y3HWY1	NA	NA
UHGV-0179016_12	eggNOG-mapper	1158604.I591_00402	NA	NA
UHGV-0179016_12	Pfam	PF14265	NA	DUF4355
UHGV-0179016_12	Structural annotation	PF14265	NA	NA
UHGV-0179016_13	PHROG	phrog_5859	NA	unknown function
UHGV-0179016_13	eggNOG-mapper	1158604.I591_00401	NA	NA
UHGV-0179016_13	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0179016_14	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0179016_14	UniRef90	UniRef90_A0A7U8FBT1	Minor head protein	NA
UHGV-0179016_14	eggNOG-mapper	1158604.I591_00400	cell adhesion	NA
UHGV-0179016_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0179016_14	COG	COG2369	NA	NA
UHGV-0179016_14	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0179016_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179016_15	UniRef90	UniRef90_A0A511J5V4	Portal protein	NA
UHGV-0179016_15	eggNOG-mapper	1158604.I591_00399	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179016_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179016_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0179016_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179016_16	PHROG	phrog_5902	NA	unknown function
UHGV-0179016_16	UniRef90	UniRef90_A0A511J545	Terminase_3 domain-containing protein	NA
UHGV-0179016_16	eggNOG-mapper	1158604.I591_00398	Phage terminase large subunit	NA
UHGV-0179016_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179016_16	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0179016_16	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0179016_17	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0179016_17	UniRef90	UniRef90_UPI001898918F	phage terminase small subunit	NA
UHGV-0179016_17	eggNOG-mapper	1158604.I591_00397	Phage terminase small subunit	NA
UHGV-0179016_17	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0179016_17	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0179016_17	COG	COG5484	NA	NA
UHGV-0179016_17	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0179016_18	PHROG	phrog_19998	NA	unknown function
UHGV-0179016_18	UniRef90	UniRef90_UPI000CF32D90	phage tail tape measure protein	NA
UHGV-0179016_18	eggNOG-mapper	1104325.M7W_1349	NA	NA
UHGV-0179016_19	PHROG	phrog_1476	NA	unknown function
UHGV-0179016_19	eggNOG-mapper	1104325.M7W_1348	NA	NA
UHGV-0179016_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0179016_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0179016_20	UniRef90	UniRef90_A0A3F3LJQ3	Methyltransferase	NA
UHGV-0179016_20	eggNOG-mapper	1104325.M7W_1347	DNA methylase	NA
UHGV-0179016_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0179016_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0179016_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0179016_20	COG	COG0863	DNA modification methylase	NA
UHGV-0179016_20	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0179016_21	PHROG	phrog_1202	NA	unknown function
UHGV-0179016_21	eggNOG-mapper	768486.EHR_09850	NA	NA
UHGV-0179016_21	Structural annotation	PF18789	NA	NA
UHGV-0179016_22	PHROG	phrog_918	NA	unknown function
UHGV-0179016_22	UniRef90	UniRef90_UPI001E30368B	NA	NA
UHGV-0179016_22	eggNOG-mapper	1260356.D920_00086	NA	NA
UHGV-0179016_22	Pfam	PF19791	NA	DUF6275
UHGV-0179016_22	Structural annotation	PF19791	NA	NA
UHGV-0179016_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179016_24	UniRef90	UniRef90_I6RYR1	NA	NA
UHGV-0179016_24	eggNOG-mapper	1158604.I591_00519	NA	NA
UHGV-0179016_24	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-0179016_25	PHROG	phrog_7628	NA	unknown function
UHGV-0179016_25	UniRef90	UniRef90_UPI000F6BB7F7	toxin PIN	NA
UHGV-0179016_26	PHROG	phrog_2955	NA	unknown function
UHGV-0179016_27	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179016_27	UniRef90	UniRef90_UPI001A968B9B	ASCH domain-containing protein	NA
UHGV-0179016_27	eggNOG-mapper	663241.C9E2N9_9CAUD	NA	NA
UHGV-0179016_27	Pfam	PF12961	NA	DUF3850
UHGV-0179016_27	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0179016_29	PHROG	phrog_121	NA	unknown function
UHGV-0179016_29	UniRef90	UniRef90_UPI001D1858BD	NA	NA
UHGV-0179016_29	eggNOG-mapper	1158604.I591_00394	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0179016_29	Pfam	PF07852	NA	DUF1642
UHGV-0179016_29	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0179016_29	Structural annotation	PF07852	NA	NA
UHGV-0179016_31	UniRef90	UniRef90_C9B719	Predicted protein	NA
UHGV-0179016_31	eggNOG-mapper	313596.RB2501_14049	NA	NA
UHGV-0179016_31	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0179016_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179016_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179016_32	UniRef90	UniRef90_A0A2K8TFU5	Single-stranded DNA-binding protein	NA
UHGV-0179016_32	eggNOG-mapper	945021.TEH_18320	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0179016_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179016_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179016_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179016_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179016_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0179016_33	PHROG	phrog_5403	NA	unknown function
UHGV-0179016_33	eggNOG-mapper	1158612.I580_01884	NA	NA
UHGV-0179016_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0179016_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179016_34	UniRef90	UniRef90_UPI001E36C31F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0179016_34	eggNOG-mapper	218284.CCDN010000001_gene906	Endodeoxyribonuclease RusA	NA
UHGV-0179016_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0179016_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0179016_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0179016_35	eggNOG-mapper	1423724.BAMM01000020_gene1810	NA	NA
UHGV-0179016_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0179016_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0179016_36	UniRef90	UniRef90_A0A2K8TJU9	SF4 helicase domain-containing protein	NA
UHGV-0179016_36	eggNOG-mapper	1158604.I591_01788	DnaB-like helicase C terminal domain	NA
UHGV-0179016_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0179016_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0179016_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0179016_37	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179016_37	UniRef90	UniRef90_UPI001376F797	conserved phage C-terminal domain-containing protein	NA
UHGV-0179016_37	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0179016_37	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0179016_37	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0179016_37	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0179016_37	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0179016_37	Structural annotation	PF09524, PF06970, TIGR02220, NF040642, COG5625	NA	NA
UHGV-0179016_38	PHROG	phrog_398	NA	unknown function
UHGV-0179016_38	UniRef90	UniRef90_UPI000A11BA8C	putative HNHc nuclease	NA
UHGV-0179016_38	eggNOG-mapper	1071400.LBUCD034_0931	Putative HNHc nuclease	NA
UHGV-0179016_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0179016_38	Structural annotation	PF16784	NA	NA
UHGV-0179016_39	PHROG	phrog_674	NA	unknown function
UHGV-0179016_39	UniRef90	UniRef90_UPI0001CEB0D4	NA	NA
UHGV-0179016_39	eggNOG-mapper	1136177.KCA1_1066	NA	NA
UHGV-0179016_39	Pfam	PF07083	NA	DUF1351
UHGV-0179016_39	Structural annotation	PF07083	NA	NA
UHGV-0179016_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179016_40	UniRef90	UniRef90_A0A511ZIE0	Recombinase	NA
UHGV-0179016_40	eggNOG-mapper	1329250.WOSG25_420010	ERF superfamily	NA
UHGV-0179016_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0179016_40	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0179016_41	PHROG	phrog_3012	NA	unknown function
UHGV-0179016_41	eggNOG-mapper	565664.EFXG_02680	NA	NA
UHGV-0179016_41	Structural annotation	PF00410, MF_01302_B	NA	NA
UHGV-0179016_42	PHROG	phrog_4690	NA	unknown function
UHGV-0179016_42	eggNOG-mapper	1140002.I570_01465	NA	NA
UHGV-0179016_43	PHROG	phrog_13092	NA	unknown function
UHGV-0179016_43	UniRef90	UniRef90_C9B4H9	Predicted protein	NA
UHGV-0179016_43	eggNOG-mapper	1158604.I591_00504	NA	NA
UHGV-0179016_44	PHROG	phrog_25665	excisionase	integration and excision
UHGV-0179016_44	UniRef90	UniRef90_A0A377L8H8	Helix-turn-helix domain protein	NA
UHGV-0179016_44	eggNOG-mapper	1140001.I571_01129	Helix-turn-helix domain	NA
UHGV-0179016_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0179016_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0179016_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0179016_45	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0179016_45	UniRef90	UniRef90_A0A511J0C7	AntA domain-containing protein	NA
UHGV-0179016_45	eggNOG-mapper	1158604.I591_00502	AntA/AntB antirepressor	NA
UHGV-0179016_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0179016_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0179016_45	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0179016_46	UniRef90	UniRef90_A0A829A6D6	HTH cro/C1-type domain-containing protein	NA
UHGV-0179016_46	eggNOG-mapper	1300150.EMQU_0757	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179016_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179016_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179016_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179016_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0179016_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179016_47	UniRef90	UniRef90_A0A0V7YBF4	Peptidase S24	NA
UHGV-0179016_47	eggNOG-mapper	1300150.EMQU_0756	Peptidase S24-like	NA
UHGV-0179016_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179016_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0179016_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179016_47	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0179016_48	eggNOG-mapper	565664.EFXG_02687	NA	NA
UHGV-0179016_49	PHROG	phrog_888	NA	unknown function
UHGV-0179016_49	UniRef90	UniRef90_A0A132PAJ3	SHOCT domain-containing protein	NA
UHGV-0179016_49	eggNOG-mapper	226185.EF_2042	Short C-terminal domain	NA
UHGV-0179016_49	Pfam	PF14471	NA	DUF4428
UHGV-0179016_49	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0179016_49	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0179016_50	KOfam	K14059	int; integrase	NA
UHGV-0179016_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0179016_50	UniRef90	UniRef90_A0A242BLA1	Tyr recombinase domain-containing protein	NA
UHGV-0179016_50	eggNOG-mapper	1140001.I571_01119	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0179016_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0179016_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179016_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179016_50	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA