UHGV-0179023

Genome information

Genome length 36,905 bps

CDS count 46

Completeness 71.67% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179023
vOTU ID	vOTU-022565
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586687
BioSample	SAMN09781711
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.55
Jumbo phage	No

Genome content
Genome length	36,905 bps
GC content	40.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.42%
Average CDS length	744.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179023_2	PHROG	phrog_585	NA	unknown function
UHGV-0179023_2	UniRef90	UniRef90_A0A413B154	NA	NA
UHGV-0179023_2	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-0179023_2	Pfam	PF10711	NA	DUF2513
UHGV-0179023_2	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0179023_4	UniRef90	UniRef90_A0A416N3A9	XRE family transcriptional regulator	NA
UHGV-0179023_4	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0179023_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0179023_4	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0179023_6	PHROG	phrog_9188	NA	unknown function
UHGV-0179023_6	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0179023_6	Structural annotation	PF11023, MF_01502, NF002796	NA	NA
UHGV-0179023_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179023_9	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0179023_9	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0179023_9	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0179023_10	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0179023_10	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0179023_10	UniRef90	UniRef90_A0A413B186	RNase H type-1 domain-containing protein	NA
UHGV-0179023_10	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0179023_10	Pfam	PF00075	RNase H	RNase_H
UHGV-0179023_10	COG	COG0328	Ribonuclease HI	NA
UHGV-0179023_10	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0179023_11	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0179023_12	PHROG	phrog_8470	NA	unknown function
UHGV-0179023_12	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0179023_12	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-0179023_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0179023_12	Structural annotation	PF14284	NA	NA
UHGV-0179023_13	PHROG	phrog_15077	NA	unknown function
UHGV-0179023_13	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0179023_13	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0179023_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179023_13	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0179023_16	PHROG	phrog_7566	NA	unknown function
UHGV-0179023_16	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0179023_19	PHROG	phrog_6568	NA	unknown function
UHGV-0179023_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179023_20	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0179023_20	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0179023_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0179023_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0179023_21	KOfam	K06926	NA	NA
UHGV-0179023_21	PHROG	phrog_5836	NA	unknown function
UHGV-0179023_21	UniRef90	UniRef90_A0A1C5X482	Predicted ATP-binding protein involved in virulence	NA
UHGV-0179023_21	eggNOG-mapper	500633.CLOHIR_00519	NA	NA
UHGV-0179023_21	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0179023_21	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0179023_21	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0179023_21	Structural annotation	PF13304, MF_00365, NF041760, COG1195	NA	NA
UHGV-0179023_22	PHROG	phrog_10204	NA	unknown function
UHGV-0179023_22	eggNOG-mapper	1200567.JNKD01000025_gene587	NA	NA
UHGV-0179023_22	AcrCatalog	cluster_12761	NA	NA
UHGV-0179023_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0179023_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0179023_23	UniRef90	UniRef90_A0A417Q583	Phage portal protein	NA
UHGV-0179023_23	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0179023_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0179023_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0179023_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0179023_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0179023_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179023_24	PHROG	phrog_10250	NA	unknown function
UHGV-0179023_24	UniRef90	UniRef90_A0A417Q599	PBSX family phage terminase large subunit	NA
UHGV-0179023_24	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0179023_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0179023_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179023_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179023_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179023_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0179023_25	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0179023_25	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0179023_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179023_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0179023_26	UniRef90	UniRef90_A0A359MUF5	Phage capsid protein	NA
UHGV-0179023_26	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0179023_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0179023_26	COG	COG2369	NA	NA
UHGV-0179023_26	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0179023_27	PHROG	phrog_15041	NA	unknown function
UHGV-0179023_27	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0179023_27	Structural annotation	PF10827	NA	NA
UHGV-0179023_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179023_28	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0179023_28	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0179023_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179023_29	PHROG	phrog_247	major head protein	head and packaging
UHGV-0179023_29	UniRef90	UniRef90_A0A417A964	Phage coat protein	NA
UHGV-0179023_29	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0179023_29	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0179023_29	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0179023_29	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0179023_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0179023_30	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0179023_31	PHROG	phrog_3366	NA	unknown function
UHGV-0179023_31	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0179023_31	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0179023_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0179023_32	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0179023_32	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0179023_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0179023_32	Structural annotation	PF11114	NA	NA
UHGV-0179023_33	PHROG	phrog_3266	tail completion	connector
UHGV-0179023_33	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0179023_33	Structural annotation	PF12691	NA	NA
UHGV-0179023_34	PHROG	phrog_3099	NA	unknown function
UHGV-0179023_34	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0179023_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0179023_35	PHROG	phrog_11299	NA	unknown function
UHGV-0179023_35	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0179023_35	Structural annotation	PF10666	NA	NA
UHGV-0179023_36	PHROG	phrog_706	NA	unknown function
UHGV-0179023_36	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-0179023_36	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0179023_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0179023_36	Structural annotation	PF06854	NA	NA
UHGV-0179023_37	PHROG	phrog_28918	NA	unknown function
UHGV-0179023_37	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0179023_37	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0179023_37	COG	COG5412	Phage-related protein	NA
UHGV-0179023_38	PHROG	phrog_1194	NA	unknown function
UHGV-0179023_38	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0179023_38	Pfam	PF20458	NA	DUF6711
UHGV-0179023_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0179023_39	PHROG	phrog_18190	NA	unknown function
UHGV-0179023_39	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0179023_39	eggNOG-mapper	428125.CLOLEP_02759	pathogenesis	NA
UHGV-0179023_39	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0179023_39	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0179023_39	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0179023_39	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA
UHGV-0179023_42	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0179023_43	PHROG	phrog_2310	NA	unknown function