UHGV-0179046

Genome information

Genome length 42,990 bps

CDS count 63

Completeness 93.61% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179046
vOTU ID	vOTU-061861
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588703
BioSample	SAMN09781746
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.49
Jumbo phage	No

Genome content
Genome length	42,990 bps
GC content	44.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.48%
Average CDS length	641.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179046_1	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-0179046_2	PHROG	phrog_13890	NA	unknown function
UHGV-0179046_2	UniRef90	UniRef90_UPI00129DE9D4	Arc family DNA-binding protein	NA
UHGV-0179046_2	eggNOG-mapper	1160721.RBI_I00482	NA	NA
UHGV-0179046_2	Pfam	PF05534	HicB family	HicB
UHGV-0179046_2	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0179046_6	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0179046_6	PHROG	phrog_2649	endolysin	lysis
UHGV-0179046_6	UniRef90	UniRef90_UPI0018972856	M15 family metallopeptidase	NA
UHGV-0179046_6	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0179046_6	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0179046_6	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0179046_6	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0179046_7	PHROG	phrog_199	holin	lysis
UHGV-0179046_7	UniRef90	UniRef90_A0A173TWT5	Phage-related holin (Lysis protein)	NA
UHGV-0179046_7	eggNOG-mapper	1280698.AUJS01000007_gene1058	Bacteriophage holin family	NA
UHGV-0179046_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0179046_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0179046_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0179046_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0179046_9	PHROG	phrog_20274	NA	unknown function
UHGV-0179046_9	UniRef90	UniRef90_A0A1C5WMM8	Predicted membrane protein	NA
UHGV-0179046_9	eggNOG-mapper	642492.Clole_3110	NA	NA
UHGV-0179046_9	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0179046_9	COG	COG4905	NA	NA
UHGV-0179046_9	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0179046_10	PHROG	phrog_3811	NA	unknown function
UHGV-0179046_10	eggNOG-mapper	1203606.HMPREF1526_00965	NA	NA
UHGV-0179046_11	PHROG	phrog_36643	NA	unknown function
UHGV-0179046_11	UniRef90	UniRef90_UPI000DC5A879	DNRLRE domain-containing protein	NA
UHGV-0179046_11	eggNOG-mapper	411483.FAEPRAA2165_03431	cell wall binding repeat	NA
UHGV-0179046_11	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0179046_11	Structural annotation	PF05895, MF_04116, NF040520, COG1470	NA	NA
UHGV-0179046_12	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0179046_12	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0179046_12	UniRef90	UniRef90_A0A410PPH2	RNA-dependent DNA polymerase	NA
UHGV-0179046_12	eggNOG-mapper	1499689.CCNN01000007_gene1878	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0179046_12	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0179046_12	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0179046_12	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0179046_13	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0179046_13	eggNOG-mapper	411483.FAEPRAA2165_03429	23S rRNA-intervening sequence protein	NA
UHGV-0179046_13	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0179046_15	PHROG	phrog_521	tail protein	tail
UHGV-0179046_15	UniRef90	UniRef90_UPI000D36FDCE	NA	NA
UHGV-0179046_15	eggNOG-mapper	1235790.C805_00608	NA	NA
UHGV-0179046_15	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0179046_15	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0179046_15	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0179046_16	PHROG	phrog_6	baseplate protein	tail
UHGV-0179046_16	UniRef90	UniRef90_A0A1Q6LSE6	Baseplate_J domain-containing protein	NA
UHGV-0179046_16	eggNOG-mapper	1235793.C809_01948	Baseplate J-like protein	NA
UHGV-0179046_16	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0179046_16	COG	COG3299	NA	NA
UHGV-0179046_16	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0179046_17	PHROG	phrog_120	baseplate protein	tail
UHGV-0179046_17	UniRef90	UniRef90_A0A412Q0I9	NA	NA
UHGV-0179046_17	eggNOG-mapper	742740.HMPREF9474_02340	NA	NA
UHGV-0179046_17	Pfam	PF10934	NA	DUF2634
UHGV-0179046_17	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0179046_17	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0179046_18	PHROG	phrog_579	NA	unknown function
UHGV-0179046_18	UniRef90	UniRef90_A0A417J5A5	NA	NA
UHGV-0179046_18	eggNOG-mapper	357809.Cphy_2952	NA	NA
UHGV-0179046_18	Pfam	PF10844	NA	DUF2577
UHGV-0179046_18	Structural annotation	PF10844	NA	NA
UHGV-0179046_19	PHROG	phrog_400	tail protein	tail
UHGV-0179046_19	UniRef90	UniRef90_A0A173S911	CHAP domain	NA
UHGV-0179046_19	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0179046_19	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0179046_20	PHROG	phrog_380	endolysin	lysis
UHGV-0179046_20	UniRef90	UniRef90_A0A173S7Q9	LysM domain	NA
UHGV-0179046_20	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0179046_20	Pfam	PF01476	LysM domain	LysM
UHGV-0179046_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0179046_20	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0179046_21	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0179046_21	UniRef90	UniRef90_A0A173S6B7	Phage-related minor tail protein	NA
UHGV-0179046_21	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0179046_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179046_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179046_21	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0179046_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0179046_22	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0179046_22	UniRef90	UniRef90_A0A173S656	Phage XkdN-like protein	NA
UHGV-0179046_22	eggNOG-mapper	1235790.C805_00601	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0179046_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0179046_22	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0179046_23	PHROG	phrog_365	tail protein	tail
UHGV-0179046_23	UniRef90	UniRef90_A0A173S7M6	Phage-like element PBSX protein xkdM	NA
UHGV-0179046_23	eggNOG-mapper	357809.Cphy_2957	Phage tail tube protein	NA
UHGV-0179046_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0179046_23	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0179046_24	PHROG	phrog_279	tail sheath	tail
UHGV-0179046_24	UniRef90	UniRef90_A0A173S672	Phage tail sheath protein	NA
UHGV-0179046_24	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0179046_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0179046_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0179046_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0179046_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0179046_25	PHROG	phrog_966	NA	unknown function
UHGV-0179046_25	eggNOG-mapper	357809.Cphy_2959	NA	NA
UHGV-0179046_26	PHROG	phrog_525	NA	unknown function
UHGV-0179046_26	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0179046_26	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-0179046_26	Pfam	PF20765	NA	DUF6838
UHGV-0179046_26	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0179046_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179046_27	UniRef90	UniRef90_UPI0004226F87	HK97 gp10 family phage protein	NA
UHGV-0179046_27	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179046_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179046_27	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0179046_28	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0179046_28	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0179046_28	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-0179046_28	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0179046_29	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0179046_29	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-0179046_29	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0179046_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0179046_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0179046_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-0179046_30	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0179046_30	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0179046_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0179046_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179046_31	UniRef90	UniRef90_A0A173S7H6	Phage minor structural protein GP20	NA
UHGV-0179046_31	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-0179046_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179046_31	Structural annotation	PF06810	NA	NA
UHGV-0179046_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0179046_32	UniRef90	UniRef90_A0A173S657	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0179046_32	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0179046_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0179046_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0179046_32	COG	COG2369	NA	NA
UHGV-0179046_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0179046_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179046_33	UniRef90	UniRef90_A0A173S8B4	Phage portal protein, SPP1 family	NA
UHGV-0179046_33	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179046_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179046_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0179046_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0179046_34	PHROG	phrog_1233	NA	unknown function
UHGV-0179046_34	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0179046_34	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0179046_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179046_35	PHROG	phrog_10250	NA	unknown function
UHGV-0179046_35	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-0179046_35	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0179046_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0179046_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0179046_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179046_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179046_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0179046_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0179046_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0179046_36	UniRef90	UniRef90_A0A413SPG6	Phage portal protein	NA
UHGV-0179046_36	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0179046_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0179046_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0179046_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0179046_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0179046_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179046_37	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0179046_37	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0179046_37	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0179046_38	UniRef90	UniRef90_A0A1Q6EU34	ABC transporter ATP-binding protein	NA
UHGV-0179046_41	Pfam	PF04448	NA	DUF551
UHGV-0179046_42	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0179046_43	eggNOG-mapper	476272.RUMHYD_01746	NA	NA
UHGV-0179046_44	UniRef90	UniRef90_UPI001922D167	NA	NA
UHGV-0179046_44	eggNOG-mapper	357809.Cphy_0970	NA	NA
UHGV-0179046_44	Pfam	PF14199	NA	DUF4317
UHGV-0179046_44	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0179046_46	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0179046_46	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0179046_47	PHROG	phrog_36643	NA	unknown function
UHGV-0179046_47	UniRef90	UniRef90_A0A1J1CXY4	F5/8 type C domain protein	NA
UHGV-0179046_47	eggNOG-mapper	1499689.CCNN01000007_gene1879	cell wall binding repeat	NA
UHGV-0179046_47	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0179046_48	PHROG	phrog_15077	NA	unknown function
UHGV-0179046_48	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0179046_48	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0179046_48	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0179046_49	PHROG	phrog_8470	NA	unknown function
UHGV-0179046_49	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0179046_49	eggNOG-mapper	1235799.C818_00266	PcfJ-like protein	NA
UHGV-0179046_49	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0179046_49	Structural annotation	PF14284	NA	NA
UHGV-0179046_50	PHROG	phrog_4433	NA	unknown function
UHGV-0179046_50	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0179046_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0179046_50	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0179046_51	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0179046_52	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0179046_53	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179046_53	Structural annotation	PF09889, NF001638, COG4068, COG4338	NA	NA
UHGV-0179046_54	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0179046_54	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0179046_54	UniRef90	UniRef90_A0A1G5XK72	RNase H	NA
UHGV-0179046_54	eggNOG-mapper	1121448.DGI_3133	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0179046_54	Pfam	PF00075	RNase H	RNase_H
UHGV-0179046_54	COG	COG0328	Ribonuclease HI	NA
UHGV-0179046_54	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0179046_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179046_55	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0179046_55	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0179046_57	PHROG	phrog_36643	NA	unknown function
UHGV-0179046_57	eggNOG-mapper	1499689.CCNN01000007_gene1879	cell wall binding repeat	NA
UHGV-0179046_57	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0179046_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179046_60	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179046_60	UniRef90	UniRef90_A0A6N9PZQ5	XRE family transcriptional regulator	NA
UHGV-0179046_60	eggNOG-mapper	478749.BRYFOR_07503	DNA-binding helix-turn-helix protein	NA
UHGV-0179046_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179046_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179046_60	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0179046_62	eggNOG-mapper	1216932.CM240_0696	NA	NA
UHGV-0179046_62	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0179046_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0179046_63	PHROG	phrog_95	integrase	integration and excision
UHGV-0179046_63	UniRef90	UniRef90_R6NJQ5	Resolvase N-terminal domain protein	NA
UHGV-0179046_63	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0179046_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0179046_63	Pfam	PF07508	Recombinase	Recombinase
UHGV-0179046_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0179046_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0179046_63	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA