UHGV-0179103

Genome information

Genome length 50,173 bps

CDS count 77

Completeness 87.02% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179103
vOTU ID	vOTU-029061
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581291
BioSample	SAMN09781689
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.18
Jumbo phage	No

Genome content
Genome length	50,173 bps
GC content	40.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	85.55%
Average CDS length	559.91 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179103_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0179103_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0179103_2	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0179103_2	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0179103_2	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0179103_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0179103_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-0179103_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0179103_5	PHROG	phrog_21026	NA	unknown function
UHGV-0179103_6	UniRef90	UniRef90_A0A173SA50	NA	NA
UHGV-0179103_6	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0179103_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179103_7	PHROG	phrog_8684	NA	unknown function
UHGV-0179103_7	UniRef90	UniRef90_A0A822LMA9	YopX domain-containing protein	NA
UHGV-0179103_7	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0179103_7	Pfam	PF09643	YopX protein	YopX
UHGV-0179103_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0179103_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0179103_8	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0179103_8	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0179103_9	PHROG	phrog_20593	NA	unknown function
UHGV-0179103_12	PHROG	phrog_874	NA	unknown function
UHGV-0179103_12	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0179103_12	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0179103_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0179103_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0179103_14	UniRef90	UniRef90_A0A173RED2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0179103_14	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0179103_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0179103_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0179103_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0179103_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0179103_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0179103_15	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0179103_15	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0179103_15	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0179103_16	KOfam	K14059	int; integrase	NA
UHGV-0179103_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0179103_16	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0179103_16	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0179103_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179103_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179103_16	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0179103_18	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0179103_19	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0179103_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179103_20	UniRef90	UniRef90_UPI00189871DD	NUMOD4 domain-containing protein	NA
UHGV-0179103_20	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0179103_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0179103_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0179103_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0179103_20	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0179103_20	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0179103_21	PHROG	phrog_16490	NA	unknown function
UHGV-0179103_21	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0179103_22	PHROG	phrog_20016	NA	unknown function
UHGV-0179103_22	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0179103_22	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0179103_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179103_23	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0179103_24	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0179103_24	Structural annotation	PF13058	NA	NA
UHGV-0179103_27	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0179103_29	UniRef90	UniRef90_A0A3R6A796	Molecular chaperone DnaJ	NA
UHGV-0179103_29	eggNOG-mapper	500632.CLONEX_02609	DnaJ molecular chaperone homology domain	NA
UHGV-0179103_29	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0179103_29	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0179103_29	Structural annotation	PF18847	NA	NA
UHGV-0179103_30	PHROG	phrog_31631	NA	unknown function
UHGV-0179103_32	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179103_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179103_33	Structural annotation	PF19923	NA	NA
UHGV-0179103_34	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0179103_35	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0179103_35	UniRef90	UniRef90_UPI00189C4F21	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0179103_35	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0179103_35	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0179103_35	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0179103_35	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0179103_36	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0179103_39	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0179103_42	UniRef90	UniRef90_A0A553KSI4	Com family DNA-binding transcriptional regulator	NA
UHGV-0179103_42	Pfam	PF10122	NA	Mu-like_Com
UHGV-0179103_42	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0179103_43	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0179103_43	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0179103_43	UniRef90	UniRef90_A0A352SH31	RNA-splicing ligase RtcB	NA
UHGV-0179103_43	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0179103_43	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0179103_43	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0179103_43	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0179103_44	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0179103_44	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0179103_44	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0179103_44	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0179103_44	COG	COG5410	NA	NA
UHGV-0179103_44	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0179103_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179103_45	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0179103_45	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0179103_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179103_45	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0179103_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179103_46	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0179103_46	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179103_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179103_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0179103_47	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0179103_48	PHROG	phrog_909	major head protein	head and packaging
UHGV-0179103_48	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0179103_49	PHROG	phrog_29	major head protein	head and packaging
UHGV-0179103_49	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0179103_49	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0179103_49	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0179103_49	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0179103_50	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0179103_50	Structural annotation	PF21169	NA	NA
UHGV-0179103_51	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0179103_52	PHROG	phrog_1863	NA	unknown function
UHGV-0179103_52	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0179103_53	PHROG	phrog_1129	holin	lysis
UHGV-0179103_53	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0179103_53	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0179103_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0179103_53	Structural annotation	PF06946	NA	NA
UHGV-0179103_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0179103_55	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0179103_55	AcrCatalog	cluster_24841	NA	NA
UHGV-0179103_56	Structural annotation	PF05657	NA	NA
UHGV-0179103_57	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0179103_57	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0179103_60	PHROG	phrog_14030	NA	unknown function
UHGV-0179103_60	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0179103_60	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0179103_60	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0179103_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179103_61	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0179103_61	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0179103_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179103_61	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0179103_62	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0179103_62	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0179103_62	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0179103_63	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0179103_63	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0179103_63	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0179103_63	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0179103_63	COG	COG3617	Prophage antirepressor	NA
UHGV-0179103_63	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0179103_64	PHROG	phrog_1194	NA	unknown function
UHGV-0179103_64	Pfam	PF20458	NA	DUF6711
UHGV-0179103_64	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0179103_65	PHROG	phrog_18190	NA	unknown function
UHGV-0179103_65	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0179103_65	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0179103_65	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0179103_65	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0179103_66	PHROG	phrog_17196	kinase	other
UHGV-0179103_66	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0179103_66	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0179103_68	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0179103_69	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0179103_69	Structural annotation	NF040910	NA	NA
UHGV-0179103_71	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179103_71	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0179103_71	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0179103_71	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0179103_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179103_71	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179103_71	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0179103_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179103_72	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0179103_72	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0179103_72	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0179103_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179103_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179103_72	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179103_73	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0179103_73	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0179103_73	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-0179103_73	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0179103_73	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0179103_73	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0179103_73	COG	COG3617	Prophage antirepressor	NA
UHGV-0179103_73	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0179103_76	PHROG	phrog_26861	NA	unknown function
UHGV-0179103_76	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0179103_76	eggNOG-mapper	1408422.JHYF01000009_gene2023	PFAM single-strand binding protein	NA
UHGV-0179103_76	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179103_76	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179103_76	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0179103_77	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0179103_77	PHROG	phrog_10445	NA	unknown function
UHGV-0179103_77	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-0179103_77	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0179103_77	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0179103_77	Structural annotation	PF13476, MF_00449, NF041034, COG0419	NA	NA