UHGV-0179221

Genome information

Genome length 41,274 bps

CDS count 69

Completeness 91.89% (high-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179221
vOTU ID	vOTU-073357
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590433
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.31
Jumbo phage	No

Genome content
Genome length	41,274 bps
GC content	32.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.81%
Average CDS length	546.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179221_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179221_1	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0179221_1	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0179221_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179221_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179221_2	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0179221_2	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0179221_2	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0179221_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179221_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0179221_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0179221_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179221_3	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0179221_3	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0179221_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179221_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179221_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179221_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0179221_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179221_4	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0179221_4	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0179221_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179221_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179221_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179221_5	KOfam	K06904	NA	NA
UHGV-0179221_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0179221_5	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0179221_5	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0179221_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0179221_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0179221_5	COG	COG3740	Phage head maturation protease	NA
UHGV-0179221_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0179221_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179221_6	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0179221_6	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0179221_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179221_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179221_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179221_6	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179221_7	PHROG	phrog_5223	neck protein	connector
UHGV-0179221_7	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0179221_7	Structural annotation	TIGR01560	NA	NA
UHGV-0179221_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0179221_8	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0179221_8	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-0179221_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179221_9	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0179221_10	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0179221_10	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0179221_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0179221_11	PHROG	phrog_88	major tail protein	tail
UHGV-0179221_11	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0179221_11	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0179221_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179221_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0179221_12	Structural annotation	PF11836	NA	NA
UHGV-0179221_14	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0179221_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0179221_14	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0179221_14	eggNOG-mapper	1123299.AUKZ01000018_gene181	Phage-related minor tail protein	NA
UHGV-0179221_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179221_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179221_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0179221_14	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0179221_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179221_15	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0179221_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0179221_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0179221_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179221_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179221_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0179221_16	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0179221_16	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0179221_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179221_16	COG	COG4926	Phage-related protein	NA
UHGV-0179221_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179221_17	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0179221_18	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0179221_19	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0179221_20	KOfam	K01051	E3.1.1.11; pectinesterase [EC:3.1.1.11]	NA
UHGV-0179221_20	UniRef90	UniRef90_UPI001D0919FE	pectinesterase family protein	NA
UHGV-0179221_20	Pfam	PF01095	Pectinesterase	Pectinesterase
UHGV-0179221_20	COG	COG4677	Pectin methylesterase and related acyl-CoA thioesterases	NA
UHGV-0179221_20	Structural annotation	PF01095, PF10651, PF17994, NF041896, COG4677, COG3470	NA	NA
UHGV-0179221_25	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0179221_25	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0179221_26	PHROG	phrog_20016	NA	unknown function
UHGV-0179221_26	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0179221_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0179221_26	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0179221_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179221_28	PHROG	phrog_443	holin	lysis
UHGV-0179221_28	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0179221_28	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0179221_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0179221_28	Structural annotation	PF16945	NA	NA
UHGV-0179221_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0179221_30	PHROG	phrog_7698	endolysin	lysis
UHGV-0179221_30	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0179221_30	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0179221_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0179221_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0179221_30	Structural annotation	COG5632	NA	NA
UHGV-0179221_31	KOfam	K14059	int; integrase	NA
UHGV-0179221_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0179221_31	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0179221_31	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0179221_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179221_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179221_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0179221_32	PHROG	phrog_5059	NA	unknown function
UHGV-0179221_32	UniRef90	UniRef90_A0A395WDV4	NA	NA
UHGV-0179221_32	eggNOG-mapper	883156.HMPREF9282_00200	NA	NA
UHGV-0179221_32	Pfam	PF08861	NA	DUF1828
UHGV-0179221_33	UniRef90	UniRef90_A0A413CSC4	PBECR3 domain-containing protein	NA
UHGV-0179221_33	eggNOG-mapper	796940.HMPREF9628_02206	NA	NA
UHGV-0179221_33	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0179221_33	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0179221_35	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0179221_35	eggNOG-mapper	1507.HMPREF0262_00674	Host cell surface-exposed lipoprotein	NA
UHGV-0179221_35	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0179221_35	Structural annotation	MF_01114, NF001062, COG2137	NA	NA
UHGV-0179221_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0179221_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179221_36	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-0179221_36	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179221_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179221_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179221_36	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0179221_39	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0179221_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0179221_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0179221_41	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0179221_41	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0179221_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179221_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0179221_41	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0179221_45	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179221_45	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0179221_45	eggNOG-mapper	1121090.KB894719_gene1107	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0179221_45	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0179221_45	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0179221_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0179221_45	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0179221_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0179221_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179221_46	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0179221_46	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0179221_46	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0179221_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0179221_46	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0179221_49	eggNOG-mapper	171693.BN988_01626	NA	NA
UHGV-0179221_52	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179221_52	UniRef90	UniRef90_A0A374RH39	HNH endonuclease	NA
UHGV-0179221_52	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0179221_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179221_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179221_52	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0179221_53	Structural annotation	PF16789	NA	NA
UHGV-0179221_55	PHROG	phrog_15198	NA	unknown function
UHGV-0179221_55	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0179221_58	Structural annotation	PF11061	NA	NA
UHGV-0179221_61	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0179221_61	Pfam	PF07374	NA	DUF1492
UHGV-0179221_61	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0179221_63	Structural annotation	PF10879	NA	NA
UHGV-0179221_64	PHROG	phrog_2316	NA	unknown function
UHGV-0179221_64	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0179221_64	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0179221_64	Structural annotation	PF16475, MF_00436, NF033216	NA	NA