UHGV-0179235

Genome information

Genome length 57,419 bps

CDS count 99

Completeness 97.47% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179235
vOTU ID	vOTU-075237
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_575531
BioSample	SAMN07448970
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.22
Jumbo phage	No

Genome content
Genome length	57,419 bps
GC content	38.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	86.88%
Average CDS length	507.30 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179235_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0179235_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0179235_1	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0179235_1	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0179235_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0179235_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0179235_1	Structural annotation	COG0175	NA	NA
UHGV-0179235_3	PHROG	phrog_8684	NA	unknown function
UHGV-0179235_3	UniRef90	UniRef90_A0A416AFR1	YopX domain-containing protein	NA
UHGV-0179235_3	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0179235_3	Pfam	PF09643	YopX protein	YopX
UHGV-0179235_3	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0179235_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0179235_4	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0179235_7	PHROG	phrog_21026	NA	unknown function
UHGV-0179235_12	PHROG	phrog_9804	NA	unknown function
UHGV-0179235_12	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0179235_12	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0179235_12	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0179235_12	Structural annotation	PF11417	NA	NA
UHGV-0179235_14	PHROG	phrog_15198	NA	unknown function
UHGV-0179235_14	Pfam	PF04448	NA	DUF551
UHGV-0179235_15	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179235_15	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0179235_15	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0179235_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0179235_16	Structural annotation	PF17388	NA	NA
UHGV-0179235_17	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0179235_17	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-0179235_17	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0179235_17	COG	COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	NA
UHGV-0179235_17	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-0179235_18	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0179235_19	PHROG	phrog_19106	NA	unknown function
UHGV-0179235_19	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0179235_19	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0179235_19	Structural annotation	TIGR01453	NA	NA
UHGV-0179235_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179235_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179235_21	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0179235_21	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0179235_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179235_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179235_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179235_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179235_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0179235_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0179235_23	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0179235_23	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0179235_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0179235_23	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0179235_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0179235_24	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0179235_24	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0179235_24	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0179235_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0179235_25	PHROG	phrog_9822	NA	unknown function
UHGV-0179235_26	PHROG	phrog_25456	NA	unknown function
UHGV-0179235_27	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179235_27	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0179235_27	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0179235_27	Pfam	PF03837	RecT family	RecT
UHGV-0179235_27	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0179235_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0179235_27	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0179235_30	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0179235_30	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179235_30	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0179235_30	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0179235_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0179235_30	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0179235_33	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0179235_33	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0179235_34	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0179235_34	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0179235_34	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0179235_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0179235_34	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0179235_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0179235_34	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0179235_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179235_37	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0179235_37	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0179235_37	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179235_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179235_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0179235_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179235_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179235_38	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0179235_38	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0179235_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179235_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179235_38	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0179235_39	PHROG	phrog_3845	NA	unknown function
UHGV-0179235_39	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0179235_41	PHROG	phrog_1419	tail protein	tail
UHGV-0179235_41	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0179235_42	PHROG	phrog_6616	tail protein	tail
UHGV-0179235_42	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0179235_42	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0179235_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0179235_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0179235_43	PHROG	phrog_1194	NA	unknown function
UHGV-0179235_43	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-0179235_43	Pfam	PF20458	NA	DUF6711
UHGV-0179235_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0179235_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179235_44	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0179235_44	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0179235_45	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179235_45	UniRef90	UniRef90_UPI0019508CCD	GIY-YIG nuclease family protein	NA
UHGV-0179235_45	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0179235_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179235_46	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0179235_46	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0179235_46	COG	COG1511	NA	NA
UHGV-0179235_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0179235_47	PHROG	phrog_291	endolysin	lysis
UHGV-0179235_47	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0179235_47	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0179235_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179235_47	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0179235_47	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0179235_50	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0179235_50	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0179235_51	Structural annotation	PF05657	NA	NA
UHGV-0179235_52	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0179235_52	AcrCatalog	cluster_24841	NA	NA
UHGV-0179235_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0179235_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0179235_54	PHROG	phrog_1129	holin	lysis
UHGV-0179235_54	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0179235_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0179235_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0179235_54	Structural annotation	PF06946	NA	NA
UHGV-0179235_55	PHROG	phrog_1863	NA	unknown function
UHGV-0179235_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0179235_57	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0179235_57	Structural annotation	PF21169	NA	NA
UHGV-0179235_58	PHROG	phrog_29	major head protein	head and packaging
UHGV-0179235_58	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0179235_58	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0179235_58	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0179235_58	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0179235_59	PHROG	phrog_909	major head protein	head and packaging
UHGV-0179235_59	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0179235_60	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0179235_60	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0179235_60	Structural annotation	PF14265	NA	NA
UHGV-0179235_61	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0179235_61	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0179235_61	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0179235_61	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0179235_61	COG	COG2369	NA	NA
UHGV-0179235_61	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0179235_62	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179235_62	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0179235_62	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179235_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179235_62	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0179235_63	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0179235_64	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179235_64	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0179235_64	Structural annotation	PF02996	NA	NA
UHGV-0179235_65	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0179235_65	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0179235_65	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0179235_65	COG	COG5410	NA	NA
UHGV-0179235_65	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0179235_66	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0179235_66	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0179235_66	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0179235_67	PHROG	phrog_1233	NA	unknown function
UHGV-0179235_67	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0179235_67	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0179235_67	Structural annotation	PF13058	NA	NA
UHGV-0179235_69	PHROG	phrog_25639	NA	unknown function
UHGV-0179235_69	eggNOG-mapper	585501.HMPREF6123_0841	NA	NA
UHGV-0179235_75	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0179235_75	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0179235_76	PHROG	phrog_22444	NA	unknown function
UHGV-0179235_76	UniRef90	UniRef90_A0A5S3QIX1	Helix-turn-helix transcriptional regulator	NA
UHGV-0179235_76	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0179235_76	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0179235_79	PHROG	phrog_236	nucleotide kinase	other
UHGV-0179235_79	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0179235_79	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0179235_79	Pfam	PF11753	NA	DUF3310
UHGV-0179235_79	Structural annotation	PF11753	NA	NA
UHGV-0179235_80	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0179235_82	PHROG	phrog_31631	NA	unknown function
UHGV-0179235_82	eggNOG-mapper	1235802.C823_04520	NA	NA
UHGV-0179235_89	PHROG	phrog_1233	NA	unknown function
UHGV-0179235_89	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0179235_90	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0179235_91	PHROG	phrog_20016	NA	unknown function
UHGV-0179235_91	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0179235_91	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0179235_91	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179235_92	PHROG	phrog_16490	NA	unknown function
UHGV-0179235_92	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0179235_94	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0179235_96	KOfam	K14059	int; integrase	NA
UHGV-0179235_96	PHROG	phrog_1	integrase	integration and excision
UHGV-0179235_96	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0179235_96	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-0179235_96	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0179235_96	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179235_96	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179235_96	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0179235_97	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0179235_97	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0179235_97	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0179235_97	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0179235_97	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0179235_97	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0179235_97	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0179235_98	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0179235_99	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0179235_99	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0179235_99	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0179235_99	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0179235_99	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA