UHGV-0179278

Genome information

Genome length 12,531 bps

CDS count 18

Completeness 92.04% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179278
vOTU ID	vOTU-062380
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_565682
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.25
Jumbo phage	No

Genome content
Genome length	12,531 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	95.98%
Average CDS length	671.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179278_2	Structural annotation	PF14606, PF01664, NF007819	NA	NA
UHGV-0179278_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0179278_4	UniRef90	UniRef90_I3PV47	Connector protein	NA
UHGV-0179278_4	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0179278_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0179278_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0179278_5	PHROG	phrog_11037	NA	unknown function
UHGV-0179278_5	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0179278_5	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0179278_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0179278_5	COG	COG3942	Surface antigen	NA
UHGV-0179278_5	Structural annotation	PF18013	NA	NA
UHGV-0179278_6	Structural annotation	PF20934	NA	NA
UHGV-0179278_7	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0179278_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0179278_9	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0179278_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0179278_11	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0179278_11	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0179278_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179278_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0179278_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0179278_12	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0179278_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0179278_12	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0179278_15	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179278_15	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0179278_15	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0179278_15	Structural annotation	PF17427	NA	NA