UHGV-0179305

Genome information

Genome length 35,789 bps

CDS count 56

Completeness 98.77% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179305
vOTU ID	vOTU-065466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591885
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.25
Jumbo phage	No

Genome content
Genome length	35,789 bps
GC content	59.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.93%
Average CDS length	596.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179305_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179305_1	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0179305_1	eggNOG-mapper	696748.ASU2_03205	HNH endonuclease	NA
UHGV-0179305_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179305_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179305_2	UniRef90	UniRef90_A0A7C6WSC4	NA	NA
UHGV-0179305_2	eggNOG-mapper	1127695.HMPREF9163_00372	sigma factor activity	NA
UHGV-0179305_2	Pfam	PF07374	NA	DUF1492
UHGV-0179305_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179305_2	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0179305_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179305_3	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0179305_3	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0179305_4	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0179305_4	UniRef90	UniRef90_A0A6N7IQE5	Adenine methyltransferase	NA
UHGV-0179305_4	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0179305_4	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0179305_4	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0179305_5	Structural annotation	NF041588	NA	NA
UHGV-0179305_6	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0179305_6	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0179305_6	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0179305_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0179305_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179305_12	UniRef90	UniRef90_A0A7V6W6S0	NA	NA
UHGV-0179305_12	eggNOG-mapper	1029823.AFIE01000007_gene1906	NA	NA
UHGV-0179305_12	Pfam	PF06356	NA	DUF1064
UHGV-0179305_12	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0179305_22	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0179305_22	PHROG	phrog_14632	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0179305_22	UniRef90	UniRef90_A0A6C2UMT5	DNA polymerase III PolC-type	NA
UHGV-0179305_22	eggNOG-mapper	373903.Hore_07800	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0179305_22	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0179305_22	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0179305_22	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0179305_22	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0179305_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179305_23	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179305_23	UniRef90	UniRef90_A0A3A8UP81	XRE family transcriptional regulator	NA
UHGV-0179305_23	eggNOG-mapper	1235802.C823_01933	Helix-turn-helix domain	NA
UHGV-0179305_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179305_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179305_23	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0179305_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179305_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0179305_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0179305_26	UniRef90	UniRef90_A0A352UMB6	Recombinase family protein	NA
UHGV-0179305_26	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0179305_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0179305_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0179305_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0179305_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0179305_26	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0179305_28	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0179305_28	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0179305_28	UniRef90	UniRef90_A0A2V2FT63	HTH cro/C1-type domain-containing protein	NA
UHGV-0179305_28	eggNOG-mapper	596330.HMPREF0628_1294	sequence-specific DNA binding	NA
UHGV-0179305_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179305_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179305_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0179305_36	PHROG	phrog_199	holin	lysis
UHGV-0179305_36	UniRef90	UniRef90_A0A7X7I5M6	Phage holin family protein	NA
UHGV-0179305_36	eggNOG-mapper	986075.CathTA2_0712	Phage-related holin (Lysis protein)	NA
UHGV-0179305_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0179305_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0179305_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0179305_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0179305_37	PHROG	phrog_1493	endolysin	lysis
UHGV-0179305_37	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0179305_37	eggNOG-mapper	294382.Q5YA51_9CAUD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0179305_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0179305_37	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0179305_37	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0179305_39	PHROG	phrog_35892	NA	unknown function
UHGV-0179305_39	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0179305_40	Structural annotation	PF16640	NA	NA
UHGV-0179305_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0179305_41	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0179305_41	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0179305_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179305_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179305_41	COG	COG4926	Phage-related protein	NA
UHGV-0179305_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179305_42	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-0179305_42	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0179305_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179305_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179305_43	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0179305_43	UniRef90	UniRef90_UPI00189C4E6E	phage tail tape measure protein	NA
UHGV-0179305_43	eggNOG-mapper	1117379.BABA_17397	Phage tail tape measure protein, TP901 family	NA
UHGV-0179305_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179305_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179305_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0179305_44	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0179305_45	PHROG	phrog_21498	NA	unknown function
UHGV-0179305_45	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0179305_45	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0179305_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179305_45	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0179305_46	PHROG	phrog_88	major tail protein	tail
UHGV-0179305_46	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0179305_46	eggNOG-mapper	1121929.KB898698_gene228	phage major tail protein, phi13 family	NA
UHGV-0179305_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179305_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0179305_47	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0179305_48	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0179305_48	Structural annotation	PF05657	NA	NA
UHGV-0179305_49	PHROG	phrog_25	head closure Hc1	connector
UHGV-0179305_49	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0179305_49	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0179305_49	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179305_50	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0179305_50	UniRef90	UniRef90_A0A0U5C947	Phage gp6-like head-tail connector protein	NA
UHGV-0179305_50	eggNOG-mapper	521674.Plim_4255	Phage gp6-like head-tail connector protein	NA
UHGV-0179305_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0179305_50	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0179305_50	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0179305_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179305_52	UniRef90	UniRef90_A0A1V5WB68	Phage capsid family protein	NA
UHGV-0179305_52	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-0179305_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179305_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179305_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179305_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179305_53	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179305_53	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179305_53	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0179305_53	eggNOG-mapper	748727.CLJU_c03550	Belongs to the peptidase S14 family	NA
UHGV-0179305_53	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179305_53	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179305_53	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0179305_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179305_54	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0179305_54	eggNOG-mapper	1121334.KB911073_gene1858	Phage portal protein, HK97 family	NA
UHGV-0179305_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179305_54	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179305_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179305_54	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179305_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179305_55	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0179305_55	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0179305_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179305_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179305_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179305_55	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179305_56	eggNOG-mapper	1449126.JQKL01000051_gene3175	NA	NA