UHGV-0179386

Genome information

Genome length 33,652 bps

CDS count 54

Completeness 75.26% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179386
vOTU ID	vOTU-029078
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582577
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.55
Jumbo phage	No

Genome content
Genome length	33,652 bps
GC content	57.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.69%
Average CDS length	578.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179386_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179386_3	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0179386_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179386_7	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0179386_7	UniRef90	UniRef90_UPI0013DE7A28	helix-turn-helix domain-containing protein	NA
UHGV-0179386_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179386_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0179386_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179386_12	KOfam	K14059	int; integrase	NA
UHGV-0179386_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0179386_12	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0179386_12	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0179386_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179386_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179386_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0179386_13	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0179386_13	Structural annotation	TIGR03826	NA	NA
UHGV-0179386_16	PHROG	phrog_25567	NA	unknown function
UHGV-0179386_16	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0179386_16	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0179386_16	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0179386_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0179386_19	PHROG	phrog_291	endolysin	lysis
UHGV-0179386_19	UniRef90	UniRef90_A0A373D0Z2	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0179386_19	eggNOG-mapper	904144.AEJD01000006_gene574	lysozyme activity	NA
UHGV-0179386_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179386_19	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0179386_19	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0179386_20	PHROG	phrog_199	holin	lysis
UHGV-0179386_20	UniRef90	UniRef90_A0A1Y3S5Y9	Holin	NA
UHGV-0179386_20	eggNOG-mapper	1195236.CTER_4406	toxin secretion phage lysis holin	NA
UHGV-0179386_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0179386_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0179386_20	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0179386_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0179386_21	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0179386_21	Structural annotation	NF040910	NA	NA
UHGV-0179386_23	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0179386_23	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0179386_24	PHROG	phrog_372	tail protein	tail
UHGV-0179386_24	UniRef90	UniRef90_A0A415H839	Pilus assembly protein	NA
UHGV-0179386_24	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0179386_24	Pfam	PF05895	NA	DUF859
UHGV-0179386_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0179386_24	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0179386_25	PHROG	phrog_18190	NA	unknown function
UHGV-0179386_25	UniRef90	UniRef90_R0CTZ0	Peptidase S74 domain-containing protein	NA
UHGV-0179386_25	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0179386_26	PHROG	phrog_1194	NA	unknown function
UHGV-0179386_26	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0179386_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179386_27	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0179386_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0179386_28	PHROG	phrog_706	NA	unknown function
UHGV-0179386_28	UniRef90	UniRef90_UPI00195A437B	Gp15 family bacteriophage protein	NA
UHGV-0179386_28	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0179386_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0179386_28	Structural annotation	PF06854	NA	NA
UHGV-0179386_29	PHROG	phrog_11299	NA	unknown function
UHGV-0179386_29	UniRef90	UniRef90_UPI001C03A209	V-type proton ATPase subunit E	NA
UHGV-0179386_29	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0179386_29	Structural annotation	PF10666	NA	NA
UHGV-0179386_30	PHROG	phrog_3099	NA	unknown function
UHGV-0179386_30	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0179386_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0179386_31	PHROG	phrog_3266	tail completion	connector
UHGV-0179386_31	eggNOG-mapper	33035.JPJF01000106_gene3127	NA	NA
UHGV-0179386_31	Structural annotation	PF12691	NA	NA
UHGV-0179386_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0179386_32	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0179386_32	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0179386_32	Structural annotation	PF11114	NA	NA
UHGV-0179386_33	PHROG	phrog_3366	NA	unknown function
UHGV-0179386_33	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0179386_33	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0179386_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0179386_34	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0179386_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0179386_36	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0179386_36	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0179386_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0179386_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179386_37	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0179386_37	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0179386_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179386_38	PHROG	phrog_28802	NA	unknown function
UHGV-0179386_38	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0179386_39	PHROG	phrog_20016	NA	unknown function
UHGV-0179386_39	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0179386_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179386_40	PHROG	phrog_16490	NA	unknown function
UHGV-0179386_40	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0179386_41	PHROG	phrog_22984	NA	unknown function
UHGV-0179386_42	PHROG	phrog_21718	NA	unknown function
UHGV-0179386_42	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0179386_43	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0179386_43	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0179386_44	PHROG	phrog_3754	NA	unknown function
UHGV-0179386_44	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0179386_45	PHROG	phrog_3675	NA	unknown function
UHGV-0179386_45	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0179386_45	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0179386_45	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0179386_45	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0179386_46	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0179386_46	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0179386_46	Structural annotation	PF20111	NA	NA
UHGV-0179386_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0179386_47	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0179386_47	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0179386_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0179386_47	COG	COG2369	NA	NA
UHGV-0179386_47	Structural annotation	PF06152	NA	NA
UHGV-0179386_48	PHROG	phrog_533	portal protein	head and packaging
UHGV-0179386_48	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0179386_48	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0179386_48	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179386_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179386_49	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0179386_49	UniRef90	UniRef90_A0A316MNS6	PBSX family phage terminase large subunit	NA
UHGV-0179386_49	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0179386_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179386_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0179386_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179386_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179386_49	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179386_51	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0179386_51	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0179386_51	UniRef90	UniRef90_A0A371ARW6	Methyltransferase	NA
UHGV-0179386_51	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0179386_51	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0179386_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0179386_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0179386_51	COG	COG0863	DNA modification methylase	NA
UHGV-0179386_51	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0179386_52	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0179386_52	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0179386_53	PHROG	phrog_6568	NA	unknown function
UHGV-0179386_53	eggNOG-mapper	411460.RUMTOR_01363	NA	NA