UHGV-0179392

Genome information

Genome length 35,064 bps

CDS count 56

Completeness 63.79% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179392
vOTU ID	vOTU-029079
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582573
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	63.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.92
Jumbo phage	No

Genome content
Genome length	35,064 bps
GC content	60.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.66%
Average CDS length	565.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179392_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179392_1	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0179392_1	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0179392_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179392_1	Structural annotation	TIGR02646	NA	NA
UHGV-0179392_2	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179392_2	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0179392_2	Structural annotation	PF11726	NA	NA
UHGV-0179392_4	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0179392_4	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0179392_4	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0179392_4	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0179392_5	PHROG	phrog_38832	NA	unknown function
UHGV-0179392_5	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0179392_5	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0179392_6	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0179392_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0179392_6	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0179392_6	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0179392_6	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0179392_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0179392_6	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0179392_7	Pfam	PF04448	NA	DUF551
UHGV-0179392_9	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0179392_9	PHROG	phrog_27290	NA	unknown function
UHGV-0179392_9	UniRef90	UniRef90_UPI00195EFCA8	helix-turn-helix domain-containing protein	NA
UHGV-0179392_9	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0179392_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0179392_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179392_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179392_9	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0179392_10	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0179392_10	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0179392_10	UniRef90	UniRef90_A0A1Y4KNM9	AAA_31 domain-containing protein	NA
UHGV-0179392_10	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0179392_10	Pfam	PF13614	AAA domain	AAA_31
UHGV-0179392_10	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0179392_10	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0179392_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0179392_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0179392_12	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0179392_12	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0179392_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0179392_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0179392_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0179392_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0179392_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179392_13	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0179392_13	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0179392_13	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0179392_13	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0179392_15	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0179392_15	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0179392_15	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179392_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0179392_15	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0179392_15	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0179392_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179392_16	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0179392_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179392_17	UniRef90	UniRef90_A0A650EQP0	HTH cro/C1-type domain-containing protein	NA
UHGV-0179392_17	eggNOG-mapper	1484158.PSNIH1_15210	Peptidase S24-like	NA
UHGV-0179392_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179392_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179392_19	UniRef90	UniRef90_A0A845RB47	XRE family transcriptional regulator	NA
UHGV-0179392_19	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0179392_19	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179392_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179392_21	UniRef90	UniRef90_A0A096AZX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0179392_21	eggNOG-mapper	742738.HMPREF9460_04038	sequence-specific DNA binding	NA
UHGV-0179392_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179392_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179392_21	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0179392_23	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0179392_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179392_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179392_23	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179392_24	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0179392_24	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0179392_24	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0179392_24	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0179392_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0179392_24	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0179392_25	KOfam	K14059	int; integrase	NA
UHGV-0179392_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0179392_25	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0179392_25	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0179392_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179392_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179392_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0179392_26	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0179392_26	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0179392_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179392_34	PHROG	phrog_13890	NA	unknown function
UHGV-0179392_34	Structural annotation	PF01402, NF008671	NA	NA
UHGV-0179392_35	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0179392_35	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0179392_36	PHROG	phrog_21825	endolysin	lysis
UHGV-0179392_36	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0179392_36	eggNOG-mapper	675635.Psed_5814	pathogenesis	NA
UHGV-0179392_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-0179392_36	COG	COG3942	Surface antigen	NA
UHGV-0179392_36	Structural annotation	TIGR02594	NA	NA
UHGV-0179392_37	PHROG	phrog_881	holin	lysis
UHGV-0179392_37	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0179392_37	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0179392_37	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0179392_37	Structural annotation	PF16938	NA	NA
UHGV-0179392_40	PHROG	phrog_4105	NA	unknown function
UHGV-0179392_41	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0179392_41	PHROG	phrog_27545	NA	unknown function
UHGV-0179392_41	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0179392_41	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0179392_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0179392_42	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0179392_42	Structural annotation	PF18459	NA	NA
UHGV-0179392_43	PHROG	phrog_32744	NA	unknown function
UHGV-0179392_43	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0179392_43	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0179392_45	PHROG	phrog_23464	NA	unknown function
UHGV-0179392_45	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0179392_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0179392_45	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0179392_47	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0179392_48	PHROG	phrog_88	major tail protein	tail
UHGV-0179392_48	UniRef90	UniRef90_A0A4Q7PJM9	Phi13 family phage major tail protein	NA
UHGV-0179392_48	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0179392_48	COG	COG5492	NA	NA
UHGV-0179392_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0179392_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179392_49	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0179392_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179392_49	Structural annotation	TIGR01725	NA	NA
UHGV-0179392_50	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0179392_50	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0179392_50	Structural annotation	PF05657	NA	NA
UHGV-0179392_51	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0179392_51	UniRef90	UniRef90_UPI00071736EE	phage head closure protein	NA
UHGV-0179392_51	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0179392_51	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0179392_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179392_52	PHROG	phrog_2550	NA	unknown function
UHGV-0179392_52	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0179392_52	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0179392_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179392_53	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-0179392_53	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0179392_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179392_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179392_53	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179392_54	KOfam	K06904	NA	NA
UHGV-0179392_54	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0179392_54	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0179392_54	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0179392_54	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0179392_54	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0179392_54	COG	COG3740	Phage head maturation protease	NA
UHGV-0179392_54	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0179392_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179392_55	UniRef90	UniRef90_R6FMT3	HK97 family phage portal protein	NA
UHGV-0179392_55	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0179392_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179392_55	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179392_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179392_55	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0179392_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179392_56	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0179392_56	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0179392_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179392_56	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179392_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179392_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179392_56	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA