UHGV-0179400

Genome information

Genome length 23,210 bps

CDS count 44

Completeness 100.00% (complete)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179400
vOTU ID	vOTU-046680
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581856
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.94
Jumbo phage	No

Genome content
Genome length	23,210 bps
GC content	36.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.96%
Average CDS length	477.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179400_2	PHROG	phrog_2634	major tail protein	tail
UHGV-0179400_2	UniRef90	UniRef90_A0A0N9BAU7	Major tail shaft protein	NA
UHGV-0179400_2	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0179400_2	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0179400_4	KOfam	K06904	NA	NA
UHGV-0179400_4	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0179400_4	UniRef90	UniRef90_A0A0N9BAU1	Putative major capsid protein	NA
UHGV-0179400_4	Pfam	PF06673	Lactococcus lactis bacteriophage major capsid protein	L_lactis_ph-MCP
UHGV-0179400_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179400_4	Structural annotation	PF06673, PF04586, MF_04133, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-0179400_6	PHROG	phrog_827	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179400_6	UniRef90	UniRef90_A0A0N9BAV8	Holin	NA
UHGV-0179400_6	eggNOG-mapper	1165134.H9ED59_9CAUD	Lactococcus phage M3 protein	NA
UHGV-0179400_6	Pfam	PF07066	Lactococcus phage M3 protein	DUF3882
UHGV-0179400_6	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0179400_10	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179400_10	UniRef90	UniRef90_A0A7X2D188	NA	NA
UHGV-0179400_10	eggNOG-mapper	272623.L53819	NA	NA
UHGV-0179400_10	Pfam	PF12684	NA	DUF3799
UHGV-0179400_10	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0179400_10	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0179400_11	eggNOG-mapper	1121342.AUCO01000001_gene2158	HNH endonuclease	NA
UHGV-0179400_14	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0179400_14	PHROG	phrog_1284	NA	unknown function
UHGV-0179400_14	UniRef90	UniRef90_A0A0N9BAT8	Putative DNA polymerase	NA
UHGV-0179400_14	eggNOG-mapper	1165143.H9EEL3_9CAUD	AAA domain	NA
UHGV-0179400_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0179400_14	Structural annotation	PF03796, MF_01498, TIGR00416, COG3598	NA	NA
UHGV-0179400_16	PHROG	phrog_1430	NA	unknown function
UHGV-0179400_16	eggNOG-mapper	1262535.R9R291_9CAUD	NA	NA
UHGV-0179400_17	PHROG	phrog_1225	NA	unknown function
UHGV-0179400_17	UniRef90	UniRef90_Q38286	E11 protein	NA
UHGV-0179400_17	Pfam	PF11753	NA	DUF3310
UHGV-0179400_18	PHROG	phrog_1632	NA	unknown function
UHGV-0179400_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179400_19	UniRef90	UniRef90_A0A2Z2RUR4	Recombination protein	NA
UHGV-0179400_19	eggNOG-mapper	1206110.L0P6F6_9CAUD	ERF superfamily	NA
UHGV-0179400_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0179400_19	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0179400_20	PHROG	phrog_1278	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179400_20	UniRef90	UniRef90_UPI0009500242	single-stranded DNA-binding protein	NA
UHGV-0179400_20	eggNOG-mapper	31532.SSB_BPLSK	Pfam:Phage_SSB	NA
UHGV-0179400_20	Pfam	PF16773	Lactococcus phage single-stranded DNA binding protein	Phage_SSB
UHGV-0179400_20	Structural annotation	PF16773, NF005260	NA	NA
UHGV-0179400_21	PHROG	phrog_1295	NA	unknown function
UHGV-0179400_22	PHROG	phrog_1317	NA	unknown function
UHGV-0179400_22	eggNOG-mapper	213777.R9R1B9_9CAUD	NA	NA
UHGV-0179400_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179400_39	UniRef90	UniRef90_A0A0N6WMQ5	Terminase	NA
UHGV-0179400_39	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0179400_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179400_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179400_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179400_39	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179400_40	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179400_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179400_41	PHROG	phrog_12298	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0179400_42	PHROG	phrog_1379	NA	unknown function
UHGV-0179400_42	UniRef90	UniRef90_A0A2C8EFW0	Holin	NA
UHGV-0179400_42	eggNOG-mapper	1262535.R9R178_9CAUD	NA	NA
UHGV-0179400_43	PHROG	phrog_9145	tail length tape measure protein	tail
UHGV-0179400_43	UniRef90	UniRef90_A0A0N9BAU6	Minor tail protein	NA
UHGV-0179400_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179400_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179400_43	Structural annotation	PF20155, COG5280	NA	NA