UHGV-0179426

Genome information

Genome length 40,691 bps

CDS count 65

Completeness 96.69% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179426
vOTU ID	vOTU-059566
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_572850
BioSample	SAMN07284984
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.63
Jumbo phage	No

Genome content
Genome length	40,691 bps
GC content	53.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.10%
Average CDS length	566.59 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179426_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179426_2	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0179426_2	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179426_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179426_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179426_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179426_3	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0179426_3	eggNOG-mapper	1232428.CAVO010000014_gene770	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179426_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179426_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179426_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0179426_6	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0179426_6	UniRef90	UniRef90_UPI001D0F461D	Rha family transcriptional regulator	NA
UHGV-0179426_6	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0179426_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0179426_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0179426_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0179426_6	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0179426_7	PHROG	phrog_4433	NA	unknown function
UHGV-0179426_7	eggNOG-mapper	439375.Oant_2324	regulation of DNA-templated transcription, elongation	NA
UHGV-0179426_7	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0179426_7	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0179426_9	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0179426_11	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0179426_11	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0179426_11	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0179426_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0179426_13	PHROG	phrog_12305	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0179426_13	UniRef90	UniRef90_H9YSD5	ParB domain-containing protein	NA
UHGV-0179426_13	eggNOG-mapper	485918.Cpin_3847	ParB-like nuclease domain	NA
UHGV-0179426_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0179426_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179426_14	PHROG	phrog_1733	NA	unknown function
UHGV-0179426_14	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0179426_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179426_14	Structural annotation	PF03677	NA	NA
UHGV-0179426_16	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179426_16	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0179426_16	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0179426_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0179426_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179426_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179426_17	UniRef90	UniRef90_UPI001D0F2FBF	single-stranded DNA-binding protein	NA
UHGV-0179426_17	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0179426_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179426_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179426_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179426_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179426_17	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0179426_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179426_18	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0179426_18	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0179426_18	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0179426_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0179426_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179426_20	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0179426_20	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0179426_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0179426_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0179426_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0179426_21	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0179426_21	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0179426_21	UniRef90	UniRef90_A0A329TJ90	DNA methyltransferase	NA
UHGV-0179426_21	eggNOG-mapper	1235792.C808_02259	MT-A70	NA
UHGV-0179426_21	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0179426_21	Pfam	PF05063	MT-A70	MT-A70
UHGV-0179426_21	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0179426_21	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0179426_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179426_24	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0179426_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179426_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0179426_25	UniRef90	UniRef90_A0A1Y4ES07	Terminase	NA
UHGV-0179426_25	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0179426_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0179426_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179426_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0179426_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179426_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179426_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179426_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179426_26	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0179426_26	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179426_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179426_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0179426_27	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0179426_27	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0179426_27	eggNOG-mapper	1176423.I6R1H0_9VIRU	Phage Mu protein F like protein	NA
UHGV-0179426_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0179426_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0179426_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179426_29	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0179426_29	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179426_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0179426_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0179426_30	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0179426_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0179426_31	Structural annotation	PF06810	NA	NA
UHGV-0179426_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0179426_32	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0179426_32	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0179426_32	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0179426_34	PHROG	phrog_17977	NA	unknown function
UHGV-0179426_34	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0179426_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0179426_35	Structural annotation	PF13554	NA	NA
UHGV-0179426_36	PHROG	phrog_885	major tail protein	tail
UHGV-0179426_36	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0179426_36	eggNOG-mapper	642492.Clole_1864	NA	NA
UHGV-0179426_36	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0179426_39	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0179426_39	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0179426_39	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0179426_39	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0179426_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179426_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179426_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179426_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0179426_40	PHROG	phrog_3558	tail protein	tail
UHGV-0179426_40	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-0179426_40	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0179426_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179426_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179426_40	COG	COG4926	Phage-related protein	NA
UHGV-0179426_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179426_42	UniRef90	UniRef90_A0A1M6MWV9	Phage tail protein	NA
UHGV-0179426_42	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0179426_42	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0179426_43	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0179426_43	eggNOG-mapper	1136177.KCA1_2885	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0179426_43	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0179426_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0179426_44	PHROG	phrog_291	endolysin	lysis
UHGV-0179426_44	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0179426_44	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0179426_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179426_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0179426_44	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0179426_45	PHROG	phrog_1863	NA	unknown function
UHGV-0179426_45	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0179426_46	PHROG	phrog_15303	NA	unknown function
UHGV-0179426_48	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0179426_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0179426_49	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0179426_49	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0179426_49	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0179426_49	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0179426_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0179426_49	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0179426_49	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0179426_50	Structural annotation	PF07342	NA	NA
UHGV-0179426_51	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0179426_51	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0179426_51	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0179426_51	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0179426_52	PHROG	phrog_3754	NA	unknown function
UHGV-0179426_52	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0179426_53	PHROG	phrog_21718	NA	unknown function
UHGV-0179426_53	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0179426_54	PHROG	phrog_22984	NA	unknown function
UHGV-0179426_55	PHROG	phrog_16490	NA	unknown function
UHGV-0179426_55	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0179426_56	PHROG	phrog_20016	NA	unknown function
UHGV-0179426_56	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0179426_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0179426_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179426_57	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0179426_57	Structural annotation	PF12510	NA	NA
UHGV-0179426_59	KOfam	K14059	int; integrase	NA
UHGV-0179426_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0179426_59	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0179426_59	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0179426_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179426_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0179426_59	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0179426_60	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0179426_60	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0179426_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179426_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179426_60	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0179426_63	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0179426_63	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0179426_63	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0179426_63	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0179426_63	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0179426_63	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0179426_63	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0179426_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179426_65	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0179426_65	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0179426_65	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0179426_65	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179426_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179426_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA