UHGV-0179441

Genome information

Genome length 28,550 bps

CDS count 42

Completeness 77.85% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179441
vOTU ID	vOTU-029094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585550
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.58
Jumbo phage	No

Genome content
Genome length	28,550 bps
GC content	55.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.08%
Average CDS length	636.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179441_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0179441_1	UniRef90	UniRef90_A0A352SFW3	Adenylyl-sulfate reductase (Fragment)	NA
UHGV-0179441_1	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0179441_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0179441_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0179441_1	Structural annotation	PF01507, MF_00064, NF002537, COG0175	NA	NA
UHGV-0179441_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0179441_2	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0179441_2	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0179441_2	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0179441_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0179441_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0179441_5	Structural annotation	PF05082	NA	NA
UHGV-0179441_8	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0179441_12	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0179441_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179441_12	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0179441_12	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0179441_12	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179441_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179441_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179441_14	COG	COG2314	NA	NA
UHGV-0179441_16	KOfam	K14059	int; integrase	NA
UHGV-0179441_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0179441_16	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0179441_16	eggNOG-mapper	1203606.HMPREF1526_03129	Belongs to the 'phage' integrase family	NA
UHGV-0179441_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179441_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179441_16	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0179441_20	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0179441_20	UniRef90	UniRef90_C0EAX2	Abi-like protein	NA
UHGV-0179441_20	eggNOG-mapper	537013.CLOSTMETH_00989	Abi-like protein	NA
UHGV-0179441_20	PADLOC	AbiD	AbiD	Abi
UHGV-0179441_20	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0179441_20	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0179441_20	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0179441_21	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0179441_21	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0179441_21	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0179441_22	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0179441_22	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0179441_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0179441_22	Structural annotation	NF033743	NA	NA
UHGV-0179441_23	PHROG	phrog_13256	NA	unknown function
UHGV-0179441_23	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0179441_25	PHROG	phrog_937	hemolysin	other
UHGV-0179441_25	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0179441_27	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0179441_28	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0179441_29	PHROG	phrog_26795	NA	unknown function
UHGV-0179441_29	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0179441_29	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0179441_30	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0179441_30	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0179441_30	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0179441_31	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0179441_31	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0179441_31	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0179441_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179441_31	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0179441_31	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0179441_32	Structural annotation	PF11836	NA	NA
UHGV-0179441_33	PHROG	phrog_88	major tail protein	tail
UHGV-0179441_33	UniRef90	UniRef90_R9JV18	Phi13 family phage major tail protein	NA
UHGV-0179441_33	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0179441_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179441_33	COG	COG5492	NA	NA
UHGV-0179441_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0179441_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179441_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179441_34	Structural annotation	TIGR01725	NA	NA
UHGV-0179441_35	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0179441_35	Structural annotation	PF05657	NA	NA
UHGV-0179441_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0179441_36	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0179441_36	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0179441_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0179441_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0179441_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0179441_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179441_37	PHROG	phrog_5223	neck protein	connector
UHGV-0179441_37	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0179441_37	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0179441_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179441_38	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0179441_38	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0179441_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179441_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179441_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179441_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179441_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179441_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179441_39	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0179441_39	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0179441_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179441_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179441_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0179441_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179441_40	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0179441_40	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0179441_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179441_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179441_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179441_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179441_41	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0179441_41	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0179441_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179441_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179441_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179441_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179441_42	PHROG	phrog_1066	NA	unknown function
UHGV-0179441_42	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0179441_42	Structural annotation	PF05119, TIGR01558	NA	NA