UHGV-0179493

Genome information

Genome length 71,542 bps

CDS count 95

Completeness 98.62% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179493
vOTU ID	vOTU-078877
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591994
BioSample	SAMN09781729
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.22
Jumbo phage	No

Genome content
Genome length	71,542 bps
GC content	44.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	91.52%
Average CDS length	691.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179493_1	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0179493_1	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179493_1	UniRef90	UniRef90_UPI001F2ABE86	recombinase RecT	NA
UHGV-0179493_1	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-0179493_1	Pfam	PF03837	RecT family	RecT
UHGV-0179493_1	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0179493_1	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0179493_1	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0179493_2	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179493_2	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0179493_3	eggNOG-mapper	1121285.AUFK01000002_gene13	Metallo-beta-lactamase superfamily	NA
UHGV-0179493_3	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0179493_4	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0179493_4	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0179493_4	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-0179493_4	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0179493_4	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-0179493_7	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0179493_8	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179493_8	UniRef90	UniRef90_UPI001F322840	NA	NA
UHGV-0179493_8	eggNOG-mapper	537011.PREVCOP_03857	NA	NA
UHGV-0179493_8	Pfam	PF11325	NA	DUF3127
UHGV-0179493_8	Structural annotation	PF11325, MF_00720, NF005674, COG2965	NA	NA
UHGV-0179493_10	PHROG	phrog_19415	NA	unknown function
UHGV-0179493_10	UniRef90	UniRef90_A0A413BUX7	RepL domain-containing protein	NA
UHGV-0179493_10	eggNOG-mapper	762982.HMPREF9442_00538	COG NOG19076 non supervised orthologous group	NA
UHGV-0179493_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0179493_10	Structural annotation	PF04703, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0179493_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0179493_11	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179493_11	UniRef90	UniRef90_A0A1M6ES02	DNA replication protein DnaC	NA
UHGV-0179493_11	eggNOG-mapper	679190.HMPREF0650_0106	NA	NA
UHGV-0179493_11	Pfam	PF20720	Novel STAND NTPase 3	nSTAND3
UHGV-0179493_11	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0179493_13	Pfam	PF02183	Homeobox associated leucine zipper	HALZ
UHGV-0179493_19	PHROG	phrog_874	NA	unknown function
UHGV-0179493_19	eggNOG-mapper	742767.HMPREF9456_03386	NA	NA
UHGV-0179493_19	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0179493_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0179493_21	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0179493_21	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0179493_21	Pfam	PF14359	NA	DUF4406
UHGV-0179493_21	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0179493_31	Structural annotation	PF14120	NA	NA
UHGV-0179493_34	UniRef90	UniRef90_A0A1Y4AP31	PcfJ-like protein	NA
UHGV-0179493_34	eggNOG-mapper	470145.BACCOP_00142	NA	NA
UHGV-0179493_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0179493_34	Structural annotation	PF14284	NA	NA
UHGV-0179493_35	PHROG	phrog_7445	NA	unknown function
UHGV-0179493_35	UniRef90	UniRef90_A0A414HEM8	PcfK-like protein	NA
UHGV-0179493_35	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-0179493_35	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0179493_35	Structural annotation	PF14058	NA	NA
UHGV-0179493_36	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0179493_36	Structural annotation	PF14207	NA	NA
UHGV-0179493_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179493_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179493_47	UniRef90	UniRef90_A0A646FX20	Helix-turn-helix transcriptional regulator	NA
UHGV-0179493_47	eggNOG-mapper	693979.Bache_2821	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179493_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179493_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179493_50	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-0179493_50	PHROG	phrog_26616	lipoprotein	other
UHGV-0179493_50	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-0179493_51	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0179493_54	PHROG	phrog_14770	NA	unknown function
UHGV-0179493_54	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-0179493_54	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0179493_54	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0179493_54	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0179493_54	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0179493_54	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0179493_54	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0179493_54	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0179493_57	PHROG	phrog_25468	NA	unknown function
UHGV-0179493_57	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0179493_57	Structural annotation	NF033478	NA	NA
UHGV-0179493_58	PHROG	phrog_25468	NA	unknown function
UHGV-0179493_58	Structural annotation	NF033478	NA	NA
UHGV-0179493_60	Structural annotation	PF17994	NA	NA
UHGV-0179493_61	Structural annotation	PF17212	NA	NA
UHGV-0179493_63	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0179493_63	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0179493_64	PHROG	phrog_22323	NA	unknown function
UHGV-0179493_64	eggNOG-mapper	1121098.HMPREF1534_01121	NA	NA
UHGV-0179493_65	PHROG	phrog_156	portal protein	head and packaging
UHGV-0179493_65	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0179493_65	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179493_67	Structural annotation	PF02368	NA	NA
UHGV-0179493_70	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0179493_70	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0179493_70	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0179493_70	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0179493_70	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0179493_71	PHROG	phrog_32516	NA	unknown function
UHGV-0179493_71	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0179493_71	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0179493_72	UniRef90	UniRef90_UPI001F1CD6B6	rhomboid family intramembrane serine protease	NA
UHGV-0179493_72	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0179493_72	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0179493_73	PHROG	phrog_27246	NA	unknown function
UHGV-0179493_73	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0179493_76	eggNOG-mapper	1122621.ATZA01000050_gene2920	NA	NA
UHGV-0179493_77	PHROG	phrog_38431	NA	unknown function
UHGV-0179493_77	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0179493_77	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0179493_79	PHROG	phrog_28898	NA	unknown function
UHGV-0179493_79	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0179493_79	Structural annotation	PF10781	NA	NA
UHGV-0179493_80	PHROG	phrog_31654	NA	unknown function
UHGV-0179493_80	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0179493_81	PHROG	phrog_16490	NA	unknown function
UHGV-0179493_81	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0179493_81	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0179493_82	UniRef90	UniRef90_A0A8F1B604	Excisionase, terminase small subunit	NA
UHGV-0179493_82	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0179493_83	eggNOG-mapper	762982.HMPREF9442_01199	NA	NA
UHGV-0179493_84	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0179493_84	PHROG	phrog_181	endolysin	lysis
UHGV-0179493_84	UniRef90	UniRef90_A0A6A7U2A4	Glycoside hydrolase family 19 protein	NA
UHGV-0179493_84	eggNOG-mapper	1441629.PCH70_35190	hmm pf00182	NA
UHGV-0179493_84	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0179493_84	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0179493_84	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0179493_85	PHROG	phrog_15037	NA	unknown function
UHGV-0179493_85	UniRef90	UniRef90_UPI001C46F9DA	phage holin family protein	NA
UHGV-0179493_85	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0179493_85	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0179493_86	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0179493_86	PHROG	phrog_1	integrase	integration and excision
UHGV-0179493_86	UniRef90	UniRef90_UPI001E523719	site-specific integrase	NA
UHGV-0179493_86	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0179493_86	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0179493_86	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0179493_86	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179493_86	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0179493_86	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0179493_88	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0179493_88	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0179493_88	UniRef90	UniRef90_A0A353E848	RNase H type-1 domain-containing protein	NA
UHGV-0179493_88	eggNOG-mapper	113355.CM001775_gene2927	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0179493_88	Pfam	PF00075	RNase H	RNase_H
UHGV-0179493_88	COG	COG0328	Ribonuclease HI	NA
UHGV-0179493_88	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0179493_89	UniRef90	UniRef90_UPI001F3A91FA	helix-turn-helix domain-containing protein	NA
UHGV-0179493_89	eggNOG-mapper	946077.W5A_12031	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179493_89	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179493_89	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179493_89	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179493_90	PHROG	phrog_16858	NA	unknown function
UHGV-0179493_90	Structural annotation	PF08587	NA	NA
UHGV-0179493_92	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179493_92	UniRef90	UniRef90_A0A646FV86	Recombinase	NA
UHGV-0179493_92	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0179493_92	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0179493_92	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179493_94	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0179493_94	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179493_94	UniRef90	UniRef90_UPI001F328015	AAA family ATPase	NA
UHGV-0179493_94	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0179493_94	Pfam	PF13476	AAA domain	AAA_23
UHGV-0179493_94	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0179493_94	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0179493_95	Structural annotation	PF18300, COG5475	NA	NA