UHGV-0179537

Genome information

Genome length 22,434 bps

CDS count 36

Completeness 53.16% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179537
vOTU ID	vOTU-029100
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588270
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.62
Jumbo phage	No

Genome content
Genome length	22,434 bps
GC content	55.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.61%
Average CDS length	592.92 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179537_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179537_1	PHROG	phrog_10250	NA	unknown function
UHGV-0179537_1	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0179537_1	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0179537_1	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0179537_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0179537_1	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179537_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179537_1	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0179537_2	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179537_2	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0179537_2	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0179537_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179537_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0179537_4	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0179537_4	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0179537_4	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0179537_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0179537_4	COG	COG2369	NA	NA
UHGV-0179537_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0179537_6	PHROG	phrog_8680	NA	unknown function
UHGV-0179537_6	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0179537_6	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0179537_6	Pfam	PF14386	NA	DUF4417
UHGV-0179537_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179537_6	Structural annotation	PF14386	NA	NA
UHGV-0179537_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179537_8	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0179537_8	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179537_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179537_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0179537_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0179537_10	Structural annotation	PF06810	NA	NA
UHGV-0179537_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-0179537_11	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0179537_11	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0179537_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0179537_13	PHROG	phrog_17977	NA	unknown function
UHGV-0179537_13	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0179537_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179537_14	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0179537_14	Structural annotation	PF13554	NA	NA
UHGV-0179537_15	PHROG	phrog_885	major tail protein	tail
UHGV-0179537_15	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0179537_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0179537_18	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0179537_18	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0179537_18	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0179537_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179537_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179537_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179537_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0179537_19	PHROG	phrog_3558	tail protein	tail
UHGV-0179537_19	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0179537_19	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0179537_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179537_19	COG	COG4926	Phage-related protein	NA
UHGV-0179537_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179537_21	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0179537_21	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0179537_23	PHROG	phrog_19280	NA	unknown function
UHGV-0179537_23	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0179537_23	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0179537_23	Pfam	PF19789	NA	DUF6273
UHGV-0179537_23	Structural annotation	PF19789	NA	NA
UHGV-0179537_24	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-0179537_24	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0179537_26	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0179537_26	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0179537_26	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0179537_26	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0179537_26	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0179537_26	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0179537_26	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0179537_26	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0179537_28	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0179537_28	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0179537_28	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0179537_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0179537_30	PHROG	phrog_291	endolysin	lysis
UHGV-0179537_30	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0179537_30	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0179537_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179537_30	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0179537_30	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0179537_32	PHROG	phrog_15303	NA	unknown function
UHGV-0179537_35	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0179537_35	Structural annotation	PF13560, NF040522	NA	NA